Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02185 and LU632_RS02190 overlap by 17 nucleotides LU632_RS02190 and LU632_RS02195 overlap by 4 nucleotides LU632_RS02195 and LU632_RS02200 are separated by 64 nucleotides
LU632_RS02185: LU632_RS02185 - amidohydrolase/deacetylase family metallohydrolase, at 430,951 to 432,087
_RS02185
LU632_RS02190: LU632_RS02190 - DgaE family pyridoxal phosphate-dependent ammonia lyase, at 432,071 to 433,192
_RS02190
LU632_RS02195: LU632_RS02195 - KDGP aldolase family protein, at 433,189 to 433,929
_RS02195
LU632_RS02200: LU632_RS02200 - lactonase family protein, at 433,994 to 435,139
_RS02200
Position (kb) 432
433
434 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 431.146 kb on + strand, within LU632_RS02185 at 431.146 kb on + strand, within LU632_RS02185 at 431.147 kb on - strand, within LU632_RS02185 at 431.148 kb on - strand, within LU632_RS02185 at 431.272 kb on + strand, within LU632_RS02185 at 431.273 kb on - strand, within LU632_RS02185 at 431.273 kb on - strand, within LU632_RS02185 at 431.273 kb on - strand, within LU632_RS02185 at 431.386 kb on - strand, within LU632_RS02185 at 431.534 kb on + strand, within LU632_RS02185 at 431.534 kb on + strand, within LU632_RS02185 at 431.575 kb on + strand, within LU632_RS02185 at 431.576 kb on - strand, within LU632_RS02185 at 431.576 kb on - strand, within LU632_RS02185 at 431.755 kb on + strand, within LU632_RS02185 at 431.755 kb on + strand, within LU632_RS02185 at 431.755 kb on + strand, within LU632_RS02185 at 431.914 kb on + strand, within LU632_RS02185 at 432.084 kb on - strand at 432.092 kb on + strand at 432.093 kb on - strand at 432.100 kb on - strand at 432.182 kb on + strand at 432.198 kb on - strand, within LU632_RS02190 at 432.236 kb on + strand, within LU632_RS02190 at 432.236 kb on + strand, within LU632_RS02190 at 432.237 kb on - strand, within LU632_RS02190 at 432.411 kb on + strand, within LU632_RS02190 at 432.665 kb on + strand, within LU632_RS02190 at 432.666 kb on - strand, within LU632_RS02190 at 432.666 kb on - strand, within LU632_RS02190 at 432.695 kb on + strand, within LU632_RS02190 at 433.067 kb on + strand, within LU632_RS02190 at 433.079 kb on + strand, within LU632_RS02190 at 433.145 kb on - strand at 433.249 kb on - strand at 433.357 kb on + strand, within LU632_RS02195 at 433.358 kb on - strand, within LU632_RS02195 at 433.358 kb on - strand, within LU632_RS02195 at 433.780 kb on + strand, within LU632_RS02195 at 433.780 kb on + strand, within LU632_RS02195 at 433.780 kb on + strand, within LU632_RS02195 at 433.781 kb on - strand, within LU632_RS02195 at 433.781 kb on - strand, within LU632_RS02195 at 433.781 kb on - strand, within LU632_RS02195 at 433.781 kb on - strand, within LU632_RS02195 at 433.837 kb on - strand, within LU632_RS02195 at 433.841 kb on - strand, within LU632_RS02195 at 433.841 kb on - strand, within LU632_RS02195 at 433.977 kb on + strand at 433.977 kb on + strand at 433.977 kb on + strand at 433.978 kb on - strand at 433.978 kb on - strand at 433.979 kb on + strand at 433.980 kb on - strand at 433.980 kb on - strand at 433.980 kb on - strand at 433.999 kb on + strand at 434.069 kb on + strand at 434.070 kb on - strand at 434.075 kb on + strand at 434.076 kb on - strand at 434.076 kb on - strand at 434.087 kb on + strand at 434.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 431,146 + LU632_RS02185 0.17 +1.6 431,146 + LU632_RS02185 0.17 -0.8 431,147 - LU632_RS02185 0.17 +0.1 431,148 - LU632_RS02185 0.17 -1.0 431,272 + LU632_RS02185 0.28 -0.1 431,273 - LU632_RS02185 0.28 +0.0 431,273 - LU632_RS02185 0.28 +0.8 431,273 - LU632_RS02185 0.28 -1.2 431,386 - LU632_RS02185 0.38 -0.4 431,534 + LU632_RS02185 0.51 -0.4 431,534 + LU632_RS02185 0.51 -1.2 431,575 + LU632_RS02185 0.55 +2.6 431,576 - LU632_RS02185 0.55 -1.7 431,576 - LU632_RS02185 0.55 -1.9 431,755 + LU632_RS02185 0.71 +1.8 431,755 + LU632_RS02185 0.71 +1.9 431,755 + LU632_RS02185 0.71 -0.5 431,914 + LU632_RS02185 0.85 -1.0 432,084 - +1.4 432,092 + +1.3 432,093 - -0.6 432,100 - -1.6 432,182 + -0.5 432,198 - LU632_RS02190 0.11 +1.5 432,236 + LU632_RS02190 0.15 -0.3 432,236 + LU632_RS02190 0.15 -0.3 432,237 - LU632_RS02190 0.15 -0.2 432,411 + LU632_RS02190 0.30 +3.4 432,665 + LU632_RS02190 0.53 -1.5 432,666 - LU632_RS02190 0.53 -2.8 432,666 - LU632_RS02190 0.53 +1.2 432,695 + LU632_RS02190 0.56 -1.7 433,067 + LU632_RS02190 0.89 +1.1 433,079 + LU632_RS02190 0.90 -0.2 433,145 - -0.5 433,249 - -0.2 433,357 + LU632_RS02195 0.23 -0.5 433,358 - LU632_RS02195 0.23 +0.7 433,358 - LU632_RS02195 0.23 -1.2 433,780 + LU632_RS02195 0.80 -0.8 433,780 + LU632_RS02195 0.80 -0.4 433,780 + LU632_RS02195 0.80 +0.2 433,781 - LU632_RS02195 0.80 -1.5 433,781 - LU632_RS02195 0.80 -0.4 433,781 - LU632_RS02195 0.80 +1.4 433,781 - LU632_RS02195 0.80 -0.4 433,837 - LU632_RS02195 0.87 +1.5 433,841 - LU632_RS02195 0.88 +1.8 433,841 - LU632_RS02195 0.88 -1.5 433,977 + +0.4 433,977 + +1.2 433,977 + +0.5 433,978 - -0.3 433,978 - -2.1 433,979 + +0.1 433,980 - -0.5 433,980 - +0.6 433,980 - +0.4 433,999 + -0.4 434,069 + +1.5 434,070 - +2.5 434,075 + +1.2 434,076 - +0.9 434,076 - +0.2 434,087 + +1.1 434,088 - +1.0
Or see this region's nucleotide sequence