Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01660 and LU632_RS01665 overlap by 1 nucleotides LU632_RS01665 and LU632_RS01670 are separated by 154 nucleotides LU632_RS01670 and LU632_RS01675 are separated by 12 nucleotides
LU632_RS01660: LU632_RS01660 - phage tail protein, at 327,246 to 328,247
_RS01660
LU632_RS01665: LU632_RS01665 - tail fiber assembly protein, at 328,247 to 328,843
_RS01665
LU632_RS01670: LU632_RS01670 - phage tail protein, at 328,998 to 329,486
_RS01670
LU632_RS01675: LU632_RS01675 - phage tail tape measure protein, at 329,499 to 332,471
_RS01675
Position (kb) 328
329
330 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 328.305 kb on + strand at 328.393 kb on + strand, within LU632_RS01665 at 328.394 kb on - strand, within LU632_RS01665 at 328.394 kb on - strand, within LU632_RS01665 at 328.394 kb on - strand, within LU632_RS01665 at 328.464 kb on - strand, within LU632_RS01665 at 328.493 kb on + strand, within LU632_RS01665 at 328.494 kb on - strand, within LU632_RS01665 at 328.494 kb on - strand, within LU632_RS01665 at 328.525 kb on + strand, within LU632_RS01665 at 328.581 kb on - strand, within LU632_RS01665 at 328.585 kb on + strand, within LU632_RS01665 at 328.586 kb on - strand, within LU632_RS01665 at 328.716 kb on + strand, within LU632_RS01665 at 328.716 kb on + strand, within LU632_RS01665 at 328.716 kb on + strand, within LU632_RS01665 at 328.716 kb on + strand, within LU632_RS01665 at 328.717 kb on - strand, within LU632_RS01665 at 328.722 kb on + strand, within LU632_RS01665 at 328.723 kb on - strand, within LU632_RS01665 at 328.772 kb on + strand, within LU632_RS01665 at 328.776 kb on + strand, within LU632_RS01665 at 328.776 kb on + strand, within LU632_RS01665 at 328.776 kb on + strand, within LU632_RS01665 at 328.777 kb on - strand, within LU632_RS01665 at 328.842 kb on - strand at 328.842 kb on - strand at 328.893 kb on - strand at 328.899 kb on + strand at 328.925 kb on + strand at 328.935 kb on + strand at 328.985 kb on + strand at 328.985 kb on + strand at 329.035 kb on + strand at 329.106 kb on + strand, within LU632_RS01670 at 329.206 kb on - strand, within LU632_RS01670 at 329.206 kb on - strand, within LU632_RS01670 at 329.209 kb on + strand, within LU632_RS01670 at 329.209 kb on + strand, within LU632_RS01670 at 329.209 kb on + strand, within LU632_RS01670 at 329.209 kb on + strand, within LU632_RS01670 at 329.210 kb on - strand, within LU632_RS01670 at 329.210 kb on - strand, within LU632_RS01670 at 329.210 kb on - strand, within LU632_RS01670 at 329.210 kb on - strand, within LU632_RS01670 at 329.210 kb on - strand, within LU632_RS01670 at 329.264 kb on - strand, within LU632_RS01670 at 329.264 kb on - strand, within LU632_RS01670 at 329.362 kb on + strand, within LU632_RS01670 at 329.362 kb on + strand, within LU632_RS01670 at 329.363 kb on - strand, within LU632_RS01670 at 329.363 kb on - strand, within LU632_RS01670 at 329.363 kb on - strand, within LU632_RS01670 at 329.622 kb on + strand at 329.622 kb on + strand at 329.623 kb on - strand at 329.623 kb on - strand at 329.664 kb on - strand at 329.664 kb on - strand at 329.754 kb on - strand at 329.879 kb on + strand, within LU632_RS01675 at 330.022 kb on - strand, within LU632_RS01675 at 330.123 kb on + strand, within LU632_RS01675 at 330.124 kb on - strand, within LU632_RS01675 at 330.124 kb on - strand, within LU632_RS01675 at 330.129 kb on - strand, within LU632_RS01675 at 330.252 kb on + strand, within LU632_RS01675 at 330.369 kb on + strand, within LU632_RS01675 at 330.369 kb on + strand, within LU632_RS01675 at 330.369 kb on + strand, within LU632_RS01675 at 330.369 kb on + strand, within LU632_RS01675 at 330.369 kb on + strand, within LU632_RS01675 at 330.370 kb on - strand, within LU632_RS01675 at 330.370 kb on - strand, within LU632_RS01675
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 328,305 + -0.8 328,393 + LU632_RS01665 0.24 +1.1 328,394 - LU632_RS01665 0.25 -1.0 328,394 - LU632_RS01665 0.25 -1.3 328,394 - LU632_RS01665 0.25 +0.4 328,464 - LU632_RS01665 0.36 -1.1 328,493 + LU632_RS01665 0.41 -1.7 328,494 - LU632_RS01665 0.41 -0.3 328,494 - LU632_RS01665 0.41 -2.3 328,525 + LU632_RS01665 0.47 -0.6 328,581 - LU632_RS01665 0.56 -1.4 328,585 + LU632_RS01665 0.57 -0.8 328,586 - LU632_RS01665 0.57 +0.3 328,716 + LU632_RS01665 0.79 -1.6 328,716 + LU632_RS01665 0.79 -0.4 328,716 + LU632_RS01665 0.79 +0.1 328,716 + LU632_RS01665 0.79 +1.6 328,717 - LU632_RS01665 0.79 -3.4 328,722 + LU632_RS01665 0.80 -0.7 328,723 - LU632_RS01665 0.80 -1.2 328,772 + LU632_RS01665 0.88 +2.7 328,776 + LU632_RS01665 0.89 -0.7 328,776 + LU632_RS01665 0.89 -0.8 328,776 + LU632_RS01665 0.89 -0.6 328,777 - LU632_RS01665 0.89 -0.2 328,842 - -0.1 328,842 - +1.3 328,893 - -0.9 328,899 + +1.1 328,925 + -0.9 328,935 + -1.1 328,985 + -1.8 328,985 + -0.2 329,035 + -1.0 329,106 + LU632_RS01670 0.22 +0.5 329,206 - LU632_RS01670 0.43 -0.2 329,206 - LU632_RS01670 0.43 -0.2 329,209 + LU632_RS01670 0.43 +1.1 329,209 + LU632_RS01670 0.43 -1.8 329,209 + LU632_RS01670 0.43 -1.8 329,209 + LU632_RS01670 0.43 -0.2 329,210 - LU632_RS01670 0.43 +2.6 329,210 - LU632_RS01670 0.43 -0.5 329,210 - LU632_RS01670 0.43 -2.2 329,210 - LU632_RS01670 0.43 -0.2 329,210 - LU632_RS01670 0.43 -0.2 329,264 - LU632_RS01670 0.54 -0.2 329,264 - LU632_RS01670 0.54 +1.2 329,362 + LU632_RS01670 0.74 -0.6 329,362 + LU632_RS01670 0.74 -0.0 329,363 - LU632_RS01670 0.75 +0.6 329,363 - LU632_RS01670 0.75 -1.6 329,363 - LU632_RS01670 0.75 +4.3 329,622 + +2.3 329,622 + -1.9 329,623 - -0.6 329,623 - -0.4 329,664 - +1.6 329,664 - +0.1 329,754 - +0.2 329,879 + LU632_RS01675 0.13 +0.8 330,022 - LU632_RS01675 0.18 +0.2 330,123 + LU632_RS01675 0.21 +2.0 330,124 - LU632_RS01675 0.21 -1.7 330,124 - LU632_RS01675 0.21 -0.1 330,129 - LU632_RS01675 0.21 -0.4 330,252 + LU632_RS01675 0.25 +0.9 330,369 + LU632_RS01675 0.29 -1.2 330,369 + LU632_RS01675 0.29 -0.7 330,369 + LU632_RS01675 0.29 +0.2 330,369 + LU632_RS01675 0.29 +1.6 330,369 + LU632_RS01675 0.29 -0.8 330,370 - LU632_RS01675 0.29 +0.3 330,370 - LU632_RS01675 0.29 +0.2
Or see this region's nucleotide sequence