Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mtnA and mtnK are separated by 151 nucleotides mtnK and LU632_RS01125 are separated by 74 nucleotides LU632_RS01125 and LU632_RS01130 are separated by 130 nucleotides
LU632_RS01115: mtnA - S-methyl-5-thioribose-1-phosphate isomerase, at 237,664 to 238,695
mtnA
LU632_RS01120: mtnK - S-methyl-5-thioribose kinase, at 238,847 to 240,032
mtnK
LU632_RS01125: LU632_RS01125 - IS5/IS1182 family transposase, at 240,107 to 240,743
_RS01125
LU632_RS01130: LU632_RS01130 - acyl-CoA dehydrogenase family protein, at 240,874 to 241,640
_RS01130
Position (kb) 238
239
240
241 Strain fitness (log2 ratio) -2
-1
0
1
2 at 237.874 kb on - strand, within mtnA at 237.906 kb on + strand, within mtnA at 237.907 kb on - strand, within mtnA at 237.907 kb on - strand, within mtnA at 237.926 kb on + strand, within mtnA at 237.968 kb on + strand, within mtnA at 237.969 kb on - strand, within mtnA at 237.969 kb on - strand, within mtnA at 238.096 kb on - strand, within mtnA at 238.260 kb on + strand, within mtnA at 238.261 kb on - strand, within mtnA at 238.261 kb on - strand, within mtnA at 238.265 kb on - strand, within mtnA at 238.265 kb on - strand, within mtnA at 238.309 kb on - strand, within mtnA at 238.327 kb on - strand, within mtnA at 238.327 kb on - strand, within mtnA at 238.327 kb on - strand, within mtnA at 238.346 kb on - strand, within mtnA at 238.346 kb on - strand, within mtnA at 238.346 kb on - strand, within mtnA at 238.453 kb on + strand, within mtnA at 238.513 kb on + strand, within mtnA at 238.514 kb on - strand, within mtnA at 238.566 kb on + strand, within mtnA at 238.648 kb on + strand at 238.649 kb on - strand at 238.670 kb on - strand at 238.681 kb on - strand at 238.685 kb on - strand at 238.729 kb on - strand at 238.754 kb on + strand at 238.754 kb on + strand at 238.774 kb on - strand at 238.846 kb on - strand at 238.856 kb on + strand at 238.861 kb on + strand at 238.861 kb on + strand at 238.862 kb on - strand at 238.889 kb on + strand at 238.889 kb on + strand at 238.889 kb on + strand at 238.890 kb on - strand at 238.890 kb on - strand at 238.890 kb on - strand at 239.114 kb on + strand, within mtnK at 239.114 kb on + strand, within mtnK at 239.115 kb on - strand, within mtnK at 239.115 kb on - strand, within mtnK at 239.155 kb on + strand, within mtnK at 239.247 kb on + strand, within mtnK at 239.269 kb on - strand, within mtnK at 239.269 kb on - strand, within mtnK at 239.284 kb on - strand, within mtnK at 239.393 kb on + strand, within mtnK at 239.586 kb on + strand, within mtnK at 239.587 kb on - strand, within mtnK at 239.640 kb on + strand, within mtnK at 239.640 kb on + strand, within mtnK at 239.640 kb on + strand, within mtnK at 239.894 kb on + strand, within mtnK at 239.896 kb on + strand, within mtnK at 239.896 kb on + strand, within mtnK at 239.896 kb on + strand, within mtnK at 239.897 kb on - strand, within mtnK at 239.897 kb on - strand, within mtnK at 239.897 kb on - strand, within mtnK at 239.984 kb on + strand at 239.985 kb on - strand at 240.084 kb on - strand at 240.084 kb on - strand at 240.119 kb on - strand at 240.841 kb on - strand at 240.841 kb on - strand at 240.989 kb on + strand, within LU632_RS01130
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 237,874 - mtnA LU632_RS01115 0.20 -0.2 237,906 + mtnA LU632_RS01115 0.23 +0.2 237,907 - mtnA LU632_RS01115 0.24 -0.3 237,907 - mtnA LU632_RS01115 0.24 -0.5 237,926 + mtnA LU632_RS01115 0.25 +0.8 237,968 + mtnA LU632_RS01115 0.29 -0.6 237,969 - mtnA LU632_RS01115 0.30 -0.5 237,969 - mtnA LU632_RS01115 0.30 +0.8 238,096 - mtnA LU632_RS01115 0.42 +1.1 238,260 + mtnA LU632_RS01115 0.58 -2.4 238,261 - mtnA LU632_RS01115 0.58 +0.7 238,261 - mtnA LU632_RS01115 0.58 -0.5 238,265 - mtnA LU632_RS01115 0.58 +0.2 238,265 - mtnA LU632_RS01115 0.58 -1.8 238,309 - mtnA LU632_RS01115 0.62 -0.3 238,327 - mtnA LU632_RS01115 0.64 -1.8 238,327 - mtnA LU632_RS01115 0.64 -0.3 238,327 - mtnA LU632_RS01115 0.64 -0.5 238,346 - mtnA LU632_RS01115 0.66 -0.1 238,346 - mtnA LU632_RS01115 0.66 +0.2 238,346 - mtnA LU632_RS01115 0.66 -0.6 238,453 + mtnA LU632_RS01115 0.76 +0.1 238,513 + mtnA LU632_RS01115 0.82 +0.5 238,514 - mtnA LU632_RS01115 0.82 -0.1 238,566 + mtnA LU632_RS01115 0.87 -0.5 238,648 + +1.7 238,649 - +0.5 238,670 - +0.5 238,681 - -0.8 238,685 - +1.6 238,729 - +1.1 238,754 + -0.6 238,754 + -0.1 238,774 - -1.0 238,846 - -1.2 238,856 + -1.0 238,861 + -0.3 238,861 + -0.2 238,862 - +0.3 238,889 + +1.8 238,889 + +0.4 238,889 + -0.2 238,890 - +0.8 238,890 - -0.8 238,890 - +2.2 239,114 + mtnK LU632_RS01120 0.23 +1.1 239,114 + mtnK LU632_RS01120 0.23 +0.0 239,115 - mtnK LU632_RS01120 0.23 -0.4 239,115 - mtnK LU632_RS01120 0.23 -0.4 239,155 + mtnK LU632_RS01120 0.26 -1.9 239,247 + mtnK LU632_RS01120 0.34 +1.0 239,269 - mtnK LU632_RS01120 0.36 -0.3 239,269 - mtnK LU632_RS01120 0.36 -0.3 239,284 - mtnK LU632_RS01120 0.37 -0.5 239,393 + mtnK LU632_RS01120 0.46 -0.4 239,586 + mtnK LU632_RS01120 0.62 +0.2 239,587 - mtnK LU632_RS01120 0.62 +0.1 239,640 + mtnK LU632_RS01120 0.67 +1.4 239,640 + mtnK LU632_RS01120 0.67 -0.7 239,640 + mtnK LU632_RS01120 0.67 -1.5 239,894 + mtnK LU632_RS01120 0.88 -0.8 239,896 + mtnK LU632_RS01120 0.88 +0.6 239,896 + mtnK LU632_RS01120 0.88 +1.1 239,896 + mtnK LU632_RS01120 0.88 -1.0 239,897 - mtnK LU632_RS01120 0.89 -2.6 239,897 - mtnK LU632_RS01120 0.89 +0.1 239,897 - mtnK LU632_RS01120 0.89 +0.2 239,984 + +0.8 239,985 - -0.8 240,084 - +0.7 240,084 - -2.7 240,119 - -0.8 240,841 - -0.0 240,841 - -1.3 240,989 + LU632_RS01130 0.15 -0.2
Or see this region's nucleotide sequence