Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rnhA and dnaQ are separated by 51 nucleotides dnaQ and LU632_RS01100 are separated by 122 nucleotides LU632_RS01100 and mtnC are separated by 475 nucleotides mtnC and LU632_RS01110 overlap by 29 nucleotides
LU632_RS01090: rnhA - ribonuclease HI, at 234,595 to 235,062
rnhA
LU632_RS01095: dnaQ - DNA polymerase III subunit epsilon, at 235,114 to 235,848
dnaQ
LU632_RS01100: LU632_RS01100 - tRNA-Asp, at 235,971 to 236,047
_RS01100
LU632_RS01105: mtnC - acireductone synthase, at 236,523 to 236,964
mtnC
LU632_RS01110: LU632_RS01110 - acireductone dioxygenase, at 236,936 to 237,407
_RS01110
Position (kb) 235
236
237 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 235.102 kb on + strand at 235.850 kb on + strand at 235.851 kb on - strand at 235.889 kb on + strand at 235.889 kb on + strand at 235.890 kb on - strand at 235.938 kb on - strand at 236.109 kb on + strand at 236.110 kb on - strand at 236.110 kb on - strand at 236.158 kb on + strand at 236.291 kb on - strand at 236.359 kb on + strand at 236.360 kb on - strand at 236.378 kb on + strand at 236.379 kb on - strand at 236.379 kb on - strand at 236.425 kb on + strand at 236.454 kb on + strand at 236.455 kb on - strand at 236.457 kb on - strand at 236.457 kb on - strand at 236.551 kb on + strand at 236.590 kb on + strand, within mtnC at 236.590 kb on + strand, within mtnC at 236.619 kb on + strand, within mtnC at 236.620 kb on - strand, within mtnC at 236.631 kb on + strand, within mtnC at 236.631 kb on + strand, within mtnC at 236.632 kb on - strand, within mtnC at 236.632 kb on - strand, within mtnC at 236.675 kb on + strand, within mtnC at 236.680 kb on - strand, within mtnC at 236.699 kb on + strand, within mtnC at 236.699 kb on + strand, within mtnC at 236.700 kb on - strand, within mtnC at 236.700 kb on - strand, within mtnC at 236.700 kb on - strand, within mtnC at 236.802 kb on + strand, within mtnC at 236.803 kb on - strand, within mtnC at 236.804 kb on + strand, within mtnC at 236.804 kb on + strand, within mtnC at 236.804 kb on + strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.805 kb on - strand, within mtnC at 236.844 kb on + strand, within mtnC at 236.845 kb on - strand, within mtnC at 236.849 kb on + strand, within mtnC at 236.849 kb on + strand, within mtnC at 236.850 kb on - strand, within mtnC
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 235,102 + -0.5 235,850 + -0.6 235,851 - +1.2 235,889 + -1.7 235,889 + -0.9 235,890 - -0.5 235,938 - -2.3 236,109 + +2.6 236,110 - -0.8 236,110 - -0.6 236,158 + -0.6 236,291 - +0.6 236,359 + -1.3 236,360 - +0.0 236,378 + -0.5 236,379 - +0.2 236,379 - +0.2 236,425 + +1.9 236,454 + +1.0 236,455 - -0.1 236,457 - +0.5 236,457 - +1.1 236,551 + +1.7 236,590 + mtnC LU632_RS01105 0.15 -0.6 236,590 + mtnC LU632_RS01105 0.15 -0.8 236,619 + mtnC LU632_RS01105 0.22 +0.4 236,620 - mtnC LU632_RS01105 0.22 -0.5 236,631 + mtnC LU632_RS01105 0.24 +1.0 236,631 + mtnC LU632_RS01105 0.24 +0.5 236,632 - mtnC LU632_RS01105 0.25 +3.2 236,632 - mtnC LU632_RS01105 0.25 +2.5 236,675 + mtnC LU632_RS01105 0.34 +0.5 236,680 - mtnC LU632_RS01105 0.36 -1.7 236,699 + mtnC LU632_RS01105 0.40 -0.8 236,699 + mtnC LU632_RS01105 0.40 -2.0 236,700 - mtnC LU632_RS01105 0.40 -0.7 236,700 - mtnC LU632_RS01105 0.40 -0.2 236,700 - mtnC LU632_RS01105 0.40 +1.7 236,802 + mtnC LU632_RS01105 0.63 -1.2 236,803 - mtnC LU632_RS01105 0.63 +1.2 236,804 + mtnC LU632_RS01105 0.64 +1.8 236,804 + mtnC LU632_RS01105 0.64 +1.7 236,804 + mtnC LU632_RS01105 0.64 -0.5 236,805 - mtnC LU632_RS01105 0.64 +0.5 236,805 - mtnC LU632_RS01105 0.64 -0.2 236,805 - mtnC LU632_RS01105 0.64 +1.2 236,805 - mtnC LU632_RS01105 0.64 -0.4 236,844 + mtnC LU632_RS01105 0.73 -2.1 236,845 - mtnC LU632_RS01105 0.73 +1.7 236,849 + mtnC LU632_RS01105 0.74 -2.0 236,849 + mtnC LU632_RS01105 0.74 +0.6 236,850 - mtnC LU632_RS01105 0.74 -0.0
Or see this region's nucleotide sequence