Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tssH and LU632_RS00690 are separated by 74 nucleotides LU632_RS00690 and LU632_RS00695 are separated by 159 nucleotides
LU632_RS00685: tssH - type VI secretion system ATPase TssH, at 142,576 to 145,266
tssH
LU632_RS00690: LU632_RS00690 - type 1 fimbrial protein, at 145,341 to 145,892
_RS00690
LU632_RS00695: LU632_RS00695 - fimbria/pilus periplasmic chaperone, at 146,052 to 146,798
_RS00695
Position (kb) 145
146 Strain fitness (log2 ratio) -2
-1
0
1
2 at 144.372 kb on + strand, within tssH at 144.390 kb on + strand, within tssH at 144.444 kb on + strand, within tssH at 144.488 kb on + strand, within tssH at 144.489 kb on - strand, within tssH at 144.540 kb on + strand, within tssH at 144.540 kb on + strand, within tssH at 144.598 kb on + strand, within tssH at 144.663 kb on - strand, within tssH at 144.665 kb on + strand, within tssH at 144.665 kb on + strand, within tssH at 144.666 kb on - strand, within tssH at 144.666 kb on - strand, within tssH at 144.875 kb on + strand, within tssH at 144.930 kb on - strand, within tssH at 144.937 kb on + strand, within tssH at 145.060 kb on - strand at 145.149 kb on + strand at 145.149 kb on + strand at 145.222 kb on - strand at 145.233 kb on + strand at 145.314 kb on + strand at 145.357 kb on + strand at 145.363 kb on + strand at 145.363 kb on + strand at 145.478 kb on + strand, within LU632_RS00690 at 145.643 kb on + strand, within LU632_RS00690 at 145.674 kb on + strand, within LU632_RS00690 at 145.674 kb on + strand, within LU632_RS00690 at 145.700 kb on + strand, within LU632_RS00690 at 145.799 kb on + strand, within LU632_RS00690 at 145.799 kb on + strand, within LU632_RS00690 at 145.800 kb on - strand, within LU632_RS00690 at 145.800 kb on - strand, within LU632_RS00690 at 145.822 kb on - strand, within LU632_RS00690 at 145.822 kb on - strand, within LU632_RS00690 at 145.874 kb on + strand at 145.874 kb on + strand at 145.875 kb on - strand at 145.875 kb on - strand at 145.875 kb on - strand at 145.876 kb on - strand at 145.903 kb on - strand at 145.913 kb on + strand at 145.963 kb on + strand at 145.964 kb on - strand at 145.967 kb on + strand at 145.968 kb on - strand at 145.968 kb on - strand at 145.968 kb on - strand at 145.968 kb on - strand at 145.968 kb on - strand at 146.052 kb on - strand at 146.089 kb on + strand at 146.089 kb on + strand at 146.253 kb on - strand, within LU632_RS00695 at 146.833 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 144,372 + tssH LU632_RS00685 0.67 -0.4 144,390 + tssH LU632_RS00685 0.67 +0.3 144,444 + tssH LU632_RS00685 0.69 +0.2 144,488 + tssH LU632_RS00685 0.71 -1.5 144,489 - tssH LU632_RS00685 0.71 -0.0 144,540 + tssH LU632_RS00685 0.73 +0.3 144,540 + tssH LU632_RS00685 0.73 -1.0 144,598 + tssH LU632_RS00685 0.75 +1.4 144,663 - tssH LU632_RS00685 0.78 -0.2 144,665 + tssH LU632_RS00685 0.78 +0.1 144,665 + tssH LU632_RS00685 0.78 +0.0 144,666 - tssH LU632_RS00685 0.78 -0.4 144,666 - tssH LU632_RS00685 0.78 -1.2 144,875 + tssH LU632_RS00685 0.85 +1.6 144,930 - tssH LU632_RS00685 0.87 -0.5 144,937 + tssH LU632_RS00685 0.88 +0.4 145,060 - +2.3 145,149 + -0.1 145,149 + -0.6 145,222 - +0.1 145,233 + -0.1 145,314 + -0.7 145,357 + -0.8 145,363 + +0.4 145,363 + -2.5 145,478 + LU632_RS00690 0.25 -1.5 145,643 + LU632_RS00690 0.55 -2.4 145,674 + LU632_RS00690 0.60 +0.8 145,674 + LU632_RS00690 0.60 +0.7 145,700 + LU632_RS00690 0.65 -1.4 145,799 + LU632_RS00690 0.83 -0.5 145,799 + LU632_RS00690 0.83 -2.1 145,800 - LU632_RS00690 0.83 +1.0 145,800 - LU632_RS00690 0.83 -0.3 145,822 - LU632_RS00690 0.87 -2.0 145,822 - LU632_RS00690 0.87 -1.0 145,874 + -2.1 145,874 + -0.3 145,875 - +0.5 145,875 - +0.6 145,875 - -0.5 145,876 - +1.6 145,903 - +0.2 145,913 + +0.2 145,963 + +0.3 145,964 - +1.9 145,967 + +0.4 145,968 - +0.3 145,968 - -0.4 145,968 - -0.0 145,968 - -1.4 145,968 - +0.3 146,052 - -0.3 146,089 + +0.7 146,089 + +2.6 146,253 - LU632_RS00695 0.27 -0.9 146,833 - -0.8
Or see this region's nucleotide sequence