Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00440 and LU632_RS00445 are separated by 300 nucleotides LU632_RS00445 and sctC overlap by 8 nucleotides
LU632_RS00440: LU632_RS00440 - PrgH/EprH family type III secretion apparatus protein, at 89,596 to 90,849
_RS00440
LU632_RS00445: LU632_RS00445 - helix-turn-helix domain-containing protein, at 91,150 to 92,028
_RS00445
LU632_RS00450: sctC - type III secretion system outer membrane ring subunit SctC, at 92,021 to 93,793
sctC
Position (kb) 91
92
93 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 90.209 kb on - strand, within LU632_RS00440 at 90.314 kb on - strand, within LU632_RS00440 at 90.314 kb on - strand, within LU632_RS00440 at 90.372 kb on + strand, within LU632_RS00440 at 90.637 kb on - strand, within LU632_RS00440 at 90.789 kb on - strand at 91.272 kb on + strand, within LU632_RS00445 at 91.478 kb on - strand, within LU632_RS00445 at 91.553 kb on + strand, within LU632_RS00445 at 91.781 kb on - strand, within LU632_RS00445 at 91.881 kb on - strand, within LU632_RS00445 at 91.888 kb on - strand, within LU632_RS00445 at 91.900 kb on - strand, within LU632_RS00445 at 91.900 kb on - strand, within LU632_RS00445 at 92.177 kb on + strand at 92.363 kb on - strand, within sctC at 92.368 kb on + strand, within sctC at 92.378 kb on + strand, within sctC at 92.387 kb on - strand, within sctC at 92.536 kb on - strand, within sctC at 92.537 kb on + strand, within sctC at 92.537 kb on + strand, within sctC at 92.541 kb on + strand, within sctC at 92.568 kb on - strand, within sctC at 92.568 kb on - strand, within sctC at 92.569 kb on + strand, within sctC at 92.582 kb on + strand, within sctC at 92.583 kb on + strand, within sctC at 92.623 kb on + strand, within sctC at 92.657 kb on + strand, within sctC at 92.657 kb on + strand, within sctC at 92.658 kb on - strand, within sctC at 92.661 kb on + strand, within sctC at 92.662 kb on - strand, within sctC at 92.671 kb on + strand, within sctC at 92.710 kb on + strand, within sctC at 92.710 kb on + strand, within sctC at 92.722 kb on + strand, within sctC at 92.767 kb on - strand, within sctC at 92.771 kb on - strand, within sctC at 92.822 kb on + strand, within sctC at 92.905 kb on + strand, within sctC
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 90,209 - LU632_RS00440 0.49 -0.6 90,314 - LU632_RS00440 0.57 -1.5 90,314 - LU632_RS00440 0.57 +1.2 90,372 + LU632_RS00440 0.62 -1.8 90,637 - LU632_RS00440 0.83 +1.4 90,789 - +1.2 91,272 + LU632_RS00445 0.14 +1.0 91,478 - LU632_RS00445 0.37 +0.3 91,553 + LU632_RS00445 0.46 +0.3 91,781 - LU632_RS00445 0.72 +0.9 91,881 - LU632_RS00445 0.83 +1.4 91,888 - LU632_RS00445 0.84 +1.0 91,900 - LU632_RS00445 0.85 +1.3 91,900 - LU632_RS00445 0.85 +0.9 92,177 + +3.0 92,363 - sctC LU632_RS00450 0.19 +1.0 92,368 + sctC LU632_RS00450 0.20 -0.2 92,378 + sctC LU632_RS00450 0.20 -1.8 92,387 - sctC LU632_RS00450 0.21 -0.9 92,536 - sctC LU632_RS00450 0.29 +0.7 92,537 + sctC LU632_RS00450 0.29 -0.1 92,537 + sctC LU632_RS00450 0.29 -0.3 92,541 + sctC LU632_RS00450 0.29 +0.6 92,568 - sctC LU632_RS00450 0.31 +0.6 92,568 - sctC LU632_RS00450 0.31 +0.6 92,569 + sctC LU632_RS00450 0.31 +0.2 92,582 + sctC LU632_RS00450 0.32 -0.1 92,583 + sctC LU632_RS00450 0.32 +0.2 92,623 + sctC LU632_RS00450 0.34 +0.1 92,657 + sctC LU632_RS00450 0.36 +1.6 92,657 + sctC LU632_RS00450 0.36 +0.6 92,658 - sctC LU632_RS00450 0.36 +0.4 92,661 + sctC LU632_RS00450 0.36 -0.1 92,662 - sctC LU632_RS00450 0.36 -0.1 92,671 + sctC LU632_RS00450 0.37 +0.4 92,710 + sctC LU632_RS00450 0.39 +1.5 92,710 + sctC LU632_RS00450 0.39 +0.6 92,722 + sctC LU632_RS00450 0.40 +0.7 92,767 - sctC LU632_RS00450 0.42 -0.0 92,771 - sctC LU632_RS00450 0.42 -0.0 92,822 + sctC LU632_RS00450 0.45 -0.0 92,905 + sctC LU632_RS00450 0.50 +0.9
Or see this region's nucleotide sequence