Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00415 and LU632_RS00420 overlap by 14 nucleotides LU632_RS00420 and sctJ overlap by 4 nucleotides sctJ and sctI overlap by 1 nucleotides sctI and sctF are separated by 54 nucleotides sctF and LU632_RS00440 are separated by 3 nucleotides
LU632_RS00415: LU632_RS00415 - type III secretion protein, at 86,900 to 87,634
_RS00415
LU632_RS00420: LU632_RS00420 - type III secretion system protein, at 87,621 to 88,175
_RS00420
LU632_RS00425: sctJ - type III secretion inner membrane ring lipoprotein SctJ, at 88,172 to 88,942
sctJ
LU632_RS00430: sctI - type III secretion system inner rod subunit SctI, at 88,942 to 89,265
sctI
LU632_RS00435: sctF - type III secretion system needle filament subunit SctF, at 89,320 to 89,592
sctF
LU632_RS00440: LU632_RS00440 - PrgH/EprH family type III secretion apparatus protein, at 89,596 to 90,849
_RS00440
Position (kb) 88
89 Strain fitness (log2 ratio) -2
-1
0
1 at 87.626 kb on + strand at 87.770 kb on + strand, within LU632_RS00420 at 87.770 kb on + strand, within LU632_RS00420 at 87.960 kb on + strand, within LU632_RS00420 at 88.556 kb on - strand, within sctJ at 88.619 kb on - strand, within sctJ at 88.711 kb on - strand, within sctJ at 88.740 kb on - strand, within sctJ at 88.759 kb on + strand, within sctJ at 88.766 kb on - strand, within sctJ at 88.804 kb on + strand, within sctJ at 89.423 kb on + strand, within sctF at 89.584 kb on + strand at 89.669 kb on + strand at 89.669 kb on + strand at 89.669 kb on + strand at 89.670 kb on - strand at 89.851 kb on + strand, within LU632_RS00440 at 89.911 kb on - strand, within LU632_RS00440 at 89.914 kb on + strand, within LU632_RS00440
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 87,626 + -0.2 87,770 + LU632_RS00420 0.27 +0.1 87,770 + LU632_RS00420 0.27 -0.8 87,960 + LU632_RS00420 0.61 +1.2 88,556 - sctJ LU632_RS00425 0.50 +0.3 88,619 - sctJ LU632_RS00425 0.58 +0.6 88,711 - sctJ LU632_RS00425 0.70 -0.6 88,740 - sctJ LU632_RS00425 0.74 -0.8 88,759 + sctJ LU632_RS00425 0.76 +1.1 88,766 - sctJ LU632_RS00425 0.77 -0.2 88,804 + sctJ LU632_RS00425 0.82 -2.2 89,423 + sctF LU632_RS00435 0.38 -0.4 89,584 + +0.4 89,669 + -0.8 89,669 + -0.9 89,669 + -1.0 89,670 - -1.4 89,851 + LU632_RS00440 0.20 -0.8 89,911 - LU632_RS00440 0.25 -0.1 89,914 + LU632_RS00440 0.25 +0.4
Or see this region's nucleotide sequence