Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00410

Experiment: plant=Melon; plant sample=M5; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00405 and LU632_RS00410 are separated by 121 nucleotidesLU632_RS00410 and LU632_RS00415 overlap by 20 nucleotidesLU632_RS00415 and LU632_RS00420 overlap by 14 nucleotides LU632_RS00405: LU632_RS00405 - IS5 family transposase, at 85,570 to 86,375 _RS00405 LU632_RS00410: LU632_RS00410 - hypothetical protein, at 86,497 to 86,919 _RS00410 LU632_RS00415: LU632_RS00415 - type III secretion protein, at 86,900 to 87,634 _RS00415 LU632_RS00420: LU632_RS00420 - type III secretion system protein, at 87,621 to 88,175 _RS00420 Position (kb) 86 87Strain fitness (log2 ratio) -1 0 1 2at 85.510 kb on + strandat 86.503 kb on + strandat 86.569 kb on + strand, within LU632_RS00410at 86.586 kb on + strand, within LU632_RS00410at 86.591 kb on + strand, within LU632_RS00410at 86.616 kb on - strand, within LU632_RS00410at 87.626 kb on + strandat 87.770 kb on + strand, within LU632_RS00420at 87.770 kb on + strand, within LU632_RS00420

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2
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85,510 + +2.5
86,503 + +2.4
86,569 + LU632_RS00410 0.17 +1.0
86,586 + LU632_RS00410 0.21 -0.1
86,591 + LU632_RS00410 0.22 -0.5
86,616 - LU632_RS00410 0.28 -1.1
87,626 + -0.2
87,770 + LU632_RS00420 0.27 +0.1
87,770 + LU632_RS00420 0.27 -0.8

Or see this region's nucleotide sequence