Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00335 and LU632_RS00340 are separated by 50 nucleotides LU632_RS00340 and LU632_RS00345 are separated by 174 nucleotides
LU632_RS00335: LU632_RS00335 - insulinase family protein, at 70,967 to 72,460
_RS00335
LU632_RS00340: LU632_RS00340 - alpha/beta hydrolase, at 72,511 to 73,386
_RS00340
LU632_RS00345: LU632_RS00345 - IS6 family transposase, at 73,561 to 74,240
_RS00345
Position (kb) 72
73
74 Strain fitness (log2 ratio) -2
-1
0
1
2 at 71.591 kb on + strand, within LU632_RS00335 at 71.591 kb on + strand, within LU632_RS00335 at 71.592 kb on - strand, within LU632_RS00335 at 71.604 kb on - strand, within LU632_RS00335 at 71.672 kb on - strand, within LU632_RS00335 at 71.771 kb on - strand, within LU632_RS00335 at 71.771 kb on - strand, within LU632_RS00335 at 71.771 kb on - strand, within LU632_RS00335 at 71.958 kb on - strand, within LU632_RS00335 at 71.958 kb on - strand, within LU632_RS00335 at 71.980 kb on - strand, within LU632_RS00335 at 71.995 kb on + strand, within LU632_RS00335 at 72.019 kb on + strand, within LU632_RS00335 at 72.020 kb on - strand, within LU632_RS00335 at 72.131 kb on + strand, within LU632_RS00335 at 72.131 kb on + strand, within LU632_RS00335 at 72.132 kb on - strand, within LU632_RS00335 at 72.132 kb on - strand, within LU632_RS00335 at 72.309 kb on + strand, within LU632_RS00335 at 72.310 kb on - strand, within LU632_RS00335 at 72.614 kb on + strand, within LU632_RS00340 at 72.649 kb on + strand, within LU632_RS00340 at 72.675 kb on + strand, within LU632_RS00340 at 72.693 kb on + strand, within LU632_RS00340 at 72.694 kb on - strand, within LU632_RS00340 at 72.911 kb on + strand, within LU632_RS00340 at 72.954 kb on - strand, within LU632_RS00340 at 72.979 kb on - strand, within LU632_RS00340 at 72.985 kb on - strand, within LU632_RS00340 at 73.116 kb on + strand, within LU632_RS00340 at 73.170 kb on + strand, within LU632_RS00340 at 73.209 kb on + strand, within LU632_RS00340 at 73.210 kb on - strand, within LU632_RS00340 at 73.210 kb on - strand, within LU632_RS00340 at 73.258 kb on + strand, within LU632_RS00340 at 73.372 kb on + strand at 73.419 kb on + strand at 73.420 kb on - strand at 73.420 kb on - strand at 73.420 kb on - strand at 73.420 kb on - strand at 73.519 kb on - strand at 73.538 kb on - strand at 73.553 kb on - strand at 73.611 kb on + strand at 74.319 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 71,591 + LU632_RS00335 0.42 +0.2 71,591 + LU632_RS00335 0.42 +0.3 71,592 - LU632_RS00335 0.42 -0.6 71,604 - LU632_RS00335 0.43 -0.4 71,672 - LU632_RS00335 0.47 +0.1 71,771 - LU632_RS00335 0.54 -0.8 71,771 - LU632_RS00335 0.54 -1.6 71,771 - LU632_RS00335 0.54 -1.3 71,958 - LU632_RS00335 0.66 -0.5 71,958 - LU632_RS00335 0.66 -2.0 71,980 - LU632_RS00335 0.68 -0.3 71,995 + LU632_RS00335 0.69 -1.2 72,019 + LU632_RS00335 0.70 -1.0 72,020 - LU632_RS00335 0.70 +0.2 72,131 + LU632_RS00335 0.78 -0.3 72,131 + LU632_RS00335 0.78 +0.0 72,132 - LU632_RS00335 0.78 -0.0 72,132 - LU632_RS00335 0.78 -0.5 72,309 + LU632_RS00335 0.90 -0.7 72,310 - LU632_RS00335 0.90 +0.6 72,614 + LU632_RS00340 0.12 -2.3 72,649 + LU632_RS00340 0.16 -0.3 72,675 + LU632_RS00340 0.19 +0.5 72,693 + LU632_RS00340 0.21 -1.9 72,694 - LU632_RS00340 0.21 +1.0 72,911 + LU632_RS00340 0.46 -1.7 72,954 - LU632_RS00340 0.51 -0.3 72,979 - LU632_RS00340 0.53 -1.1 72,985 - LU632_RS00340 0.54 +0.1 73,116 + LU632_RS00340 0.69 -0.3 73,170 + LU632_RS00340 0.75 +0.2 73,209 + LU632_RS00340 0.80 -1.6 73,210 - LU632_RS00340 0.80 +0.2 73,210 - LU632_RS00340 0.80 +0.4 73,258 + LU632_RS00340 0.85 +0.8 73,372 + -0.6 73,419 + +1.3 73,420 - -0.2 73,420 - -1.0 73,420 - +2.2 73,420 - +1.9 73,519 - +1.0 73,538 - -0.8 73,553 - -1.9 73,611 + -0.1 74,319 - -0.5
Or see this region's nucleotide sequence