Strain Fitness in Erwinia amylovora T8 around OLJFJH_15265

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_15255 and OLJFJH_15260 are separated by 25 nucleotidesOLJFJH_15260 and OLJFJH_15265 are separated by 27 nucleotidesOLJFJH_15265 and OLJFJH_15270 are separated by 123 nucleotidesOLJFJH_15270 and OLJFJH_15275 are separated by 4 nucleotides OLJFJH_15255: OLJFJH_15255 - tRNA 2-thiouridine(34) synthase MnmA, at 3,217,721 to 3,218,830 _15255 OLJFJH_15260: OLJFJH_15260 - high frequency lysogenization protein HflD, at 3,218,856 to 3,219,500 _15260 OLJFJH_15265: OLJFJH_15265 - adenylosuccinate lyase, at 3,219,528 to 3,220,898 _15265 OLJFJH_15270: OLJFJH_15270 - two-component system response regulator PhoP, at 3,221,022 to 3,221,690 _15270 OLJFJH_15275: OLJFJH_15275 - two-component system sensor histidine kinase PhoQ, at 3,221,695 to 3,223,140 _15275 Position (kb) 3219 3220 3221Strain fitness (log2 ratio) -2 -1 0 1 2at 3218.833 kb on + strandat 3218.868 kb on + strandat 3218.871 kb on + strandat 3218.871 kb on + strandat 3218.871 kb on + strandat 3219.005 kb on + strand, within OLJFJH_15260at 3219.131 kb on + strand, within OLJFJH_15260at 3219.131 kb on + strand, within OLJFJH_15260at 3219.222 kb on + strand, within OLJFJH_15260at 3219.222 kb on + strand, within OLJFJH_15260at 3219.448 kb on + strandat 3220.945 kb on + strandat 3220.946 kb on - strandat 3220.961 kb on + strandat 3220.962 kb on - strandat 3220.976 kb on + strandat 3220.977 kb on - strandat 3220.977 kb on - strandat 3221.002 kb on - strandat 3221.032 kb on + strandat 3221.032 kb on + strandat 3221.313 kb on + strand, within OLJFJH_15270at 3221.314 kb on - strand, within OLJFJH_15270at 3221.344 kb on + strand, within OLJFJH_15270at 3221.344 kb on + strand, within OLJFJH_15270at 3221.408 kb on - strand, within OLJFJH_15270at 3221.444 kb on - strand, within OLJFJH_15270at 3221.485 kb on - strand, within OLJFJH_15270at 3221.485 kb on - strand, within OLJFJH_15270at 3221.485 kb on - strand, within OLJFJH_15270at 3221.485 kb on - strand, within OLJFJH_15270at 3221.493 kb on - strand, within OLJFJH_15270at 3221.557 kb on - strand, within OLJFJH_15270at 3221.586 kb on - strand, within OLJFJH_15270at 3221.596 kb on + strand, within OLJFJH_15270at 3221.597 kb on - strand, within OLJFJH_15270at 3221.597 kb on - strand, within OLJFJH_15270at 3221.597 kb on - strand, within OLJFJH_15270at 3221.694 kb on + strandat 3221.700 kb on + strandat 3221.701 kb on - strandat 3221.701 kb on - strandat 3221.701 kb on - strandat 3221.701 kb on - strandat 3221.701 kb on - strandat 3221.701 kb on - strandat 3221.778 kb on + strandat 3221.779 kb on - strandat 3221.779 kb on - strandat 3221.779 kb on - strandat 3221.833 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-8
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3,218,833 + +0.8
3,218,868 + +0.5
3,218,871 + -0.3
3,218,871 + -0.8
3,218,871 + -1.3
3,219,005 + OLJFJH_15260 0.23 -0.2
3,219,131 + OLJFJH_15260 0.43 -0.7
3,219,131 + OLJFJH_15260 0.43 +0.7
3,219,222 + OLJFJH_15260 0.57 +0.5
3,219,222 + OLJFJH_15260 0.57 -0.5
3,219,448 + +0.1
3,220,945 + -0.2
3,220,946 - +1.5
3,220,961 + -0.3
3,220,962 - -1.1
3,220,976 + -0.3
3,220,977 - +0.2
3,220,977 - -0.1
3,221,002 - -0.1
3,221,032 + -2.5
3,221,032 + -1.2
3,221,313 + OLJFJH_15270 0.43 -0.5
3,221,314 - OLJFJH_15270 0.44 +0.7
3,221,344 + OLJFJH_15270 0.48 +0.9
3,221,344 + OLJFJH_15270 0.48 -0.3
3,221,408 - OLJFJH_15270 0.58 +0.1
3,221,444 - OLJFJH_15270 0.63 -0.3
3,221,485 - OLJFJH_15270 0.69 +2.5
3,221,485 - OLJFJH_15270 0.69 -1.1
3,221,485 - OLJFJH_15270 0.69 +0.9
3,221,485 - OLJFJH_15270 0.69 -0.6
3,221,493 - OLJFJH_15270 0.70 -0.5
3,221,557 - OLJFJH_15270 0.80 -2.0
3,221,586 - OLJFJH_15270 0.84 -1.0
3,221,596 + OLJFJH_15270 0.86 -0.5
3,221,597 - OLJFJH_15270 0.86 -1.3
3,221,597 - OLJFJH_15270 0.86 -0.6
3,221,597 - OLJFJH_15270 0.86 +0.9
3,221,694 + +0.2
3,221,700 + +0.0
3,221,701 - -0.3
3,221,701 - -0.9
3,221,701 - +0.5
3,221,701 - +0.3
3,221,701 - -0.7
3,221,701 - +0.5
3,221,778 + +0.7
3,221,779 - -0.4
3,221,779 - -0.2
3,221,779 - +0.7
3,221,833 - +0.9

Or see this region's nucleotide sequence