Strain Fitness in Erwinia amylovora T8 around OLJFJH_10505

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_10500 and OLJFJH_10505 are separated by 82 nucleotidesOLJFJH_10505 and OLJFJH_10510 are separated by 128 nucleotides OLJFJH_10500: OLJFJH_10500 - IMP dehydrogenase, at 2,168,566 to 2,170,032 _10500 OLJFJH_10505: OLJFJH_10505 - glutamine-hydrolyzing GMP synthase, at 2,170,115 to 2,171,695 _10505 OLJFJH_10510: OLJFJH_10510 - Amino-oxidase domain-containing protein, at 2,171,824 to 2,172,738 _10510 Position (kb) 2170 2171 2172Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2169.184 kb on - strand, within OLJFJH_10500at 2169.296 kb on + strand, within OLJFJH_10500at 2169.297 kb on - strand, within OLJFJH_10500at 2169.364 kb on - strand, within OLJFJH_10500at 2169.364 kb on - strand, within OLJFJH_10500at 2169.368 kb on - strand, within OLJFJH_10500at 2169.709 kb on + strand, within OLJFJH_10500at 2169.709 kb on + strand, within OLJFJH_10500at 2169.710 kb on - strand, within OLJFJH_10500at 2169.710 kb on - strand, within OLJFJH_10500at 2169.769 kb on + strand, within OLJFJH_10500at 2169.769 kb on + strand, within OLJFJH_10500at 2169.832 kb on + strand, within OLJFJH_10500at 2169.832 kb on + strand, within OLJFJH_10500at 2169.833 kb on - strand, within OLJFJH_10500at 2169.909 kb on + strandat 2169.999 kb on + strandat 2169.999 kb on + strandat 2170.086 kb on + strandat 2171.708 kb on + strandat 2171.709 kb on - strandat 2171.735 kb on + strandat 2171.736 kb on - strandat 2171.736 kb on - strandat 2171.795 kb on - strandat 2171.807 kb on - strandat 2171.807 kb on - strandat 2171.823 kb on + strandat 2171.842 kb on - strandat 2171.854 kb on - strandat 2171.886 kb on + strandat 2171.887 kb on - strandat 2171.888 kb on + strandat 2171.889 kb on - strandat 2172.269 kb on + strand, within OLJFJH_10510at 2172.269 kb on + strand, within OLJFJH_10510at 2172.283 kb on + strand, within OLJFJH_10510at 2172.283 kb on + strand, within OLJFJH_10510at 2172.283 kb on + strand, within OLJFJH_10510at 2172.283 kb on + strand, within OLJFJH_10510at 2172.283 kb on + strand, within OLJFJH_10510at 2172.283 kb on + strand, within OLJFJH_10510at 2172.284 kb on - strand, within OLJFJH_10510at 2172.284 kb on - strand, within OLJFJH_10510at 2172.284 kb on - strand, within OLJFJH_10510at 2172.284 kb on - strand, within OLJFJH_10510at 2172.284 kb on - strand, within OLJFJH_10510at 2172.284 kb on - strand, within OLJFJH_10510at 2172.284 kb on - strand, within OLJFJH_10510at 2172.284 kb on - strand, within OLJFJH_10510at 2172.284 kb on - strand, within OLJFJH_10510at 2172.376 kb on + strand, within OLJFJH_10510at 2172.376 kb on + strand, within OLJFJH_10510at 2172.376 kb on + strand, within OLJFJH_10510at 2172.376 kb on + strand, within OLJFJH_10510at 2172.377 kb on - strand, within OLJFJH_10510at 2172.393 kb on + strand, within OLJFJH_10510at 2172.411 kb on + strand, within OLJFJH_10510at 2172.501 kb on + strand, within OLJFJH_10510at 2172.523 kb on - strand, within OLJFJH_10510at 2172.565 kb on - strand, within OLJFJH_10510at 2172.577 kb on + strand, within OLJFJH_10510at 2172.577 kb on + strand, within OLJFJH_10510at 2172.578 kb on - strand, within OLJFJH_10510at 2172.677 kb on + strandat 2172.677 kb on + strandat 2172.678 kb on - strandat 2172.681 kb on - strandat 2172.681 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-8
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2,169,184 - OLJFJH_10500 0.42 +3.0
2,169,296 + OLJFJH_10500 0.50 +1.0
2,169,297 - OLJFJH_10500 0.50 +1.7
2,169,364 - OLJFJH_10500 0.54 +1.0
2,169,364 - OLJFJH_10500 0.54 +2.0
2,169,368 - OLJFJH_10500 0.55 +3.0
2,169,709 + OLJFJH_10500 0.78 +2.0
2,169,709 + OLJFJH_10500 0.78 +2.0
2,169,710 - OLJFJH_10500 0.78 +1.4
2,169,710 - OLJFJH_10500 0.78 +0.2
2,169,769 + OLJFJH_10500 0.82 +2.0
2,169,769 + OLJFJH_10500 0.82 +2.0
2,169,832 + OLJFJH_10500 0.86 +1.9
2,169,832 + OLJFJH_10500 0.86 +2.0
2,169,833 - OLJFJH_10500 0.86 +2.0
2,169,909 + +2.4
2,169,999 + +0.3
2,169,999 + -1.9
2,170,086 + +1.7
2,171,708 + -0.3
2,171,709 - -1.5
2,171,735 + -0.0
2,171,736 - +0.5
2,171,736 - +0.6
2,171,795 - +0.4
2,171,807 - -0.7
2,171,807 - +0.5
2,171,823 + +1.2
2,171,842 - -0.5
2,171,854 - -0.2
2,171,886 + -0.1
2,171,887 - +0.3
2,171,888 + +0.4
2,171,889 - +0.6
2,172,269 + OLJFJH_10510 0.49 -0.4
2,172,269 + OLJFJH_10510 0.49 +0.2
2,172,283 + OLJFJH_10510 0.50 -1.2
2,172,283 + OLJFJH_10510 0.50 -1.5
2,172,283 + OLJFJH_10510 0.50 -0.0
2,172,283 + OLJFJH_10510 0.50 +0.4
2,172,283 + OLJFJH_10510 0.50 +0.3
2,172,283 + OLJFJH_10510 0.50 -0.8
2,172,284 - OLJFJH_10510 0.50 -0.3
2,172,284 - OLJFJH_10510 0.50 -0.3
2,172,284 - OLJFJH_10510 0.50 +0.0
2,172,284 - OLJFJH_10510 0.50 -1.2
2,172,284 - OLJFJH_10510 0.50 -0.6
2,172,284 - OLJFJH_10510 0.50 -1.9
2,172,284 - OLJFJH_10510 0.50 -0.2
2,172,284 - OLJFJH_10510 0.50 +0.8
2,172,284 - OLJFJH_10510 0.50 -0.1
2,172,376 + OLJFJH_10510 0.60 -1.5
2,172,376 + OLJFJH_10510 0.60 -0.1
2,172,376 + OLJFJH_10510 0.60 +0.5
2,172,376 + OLJFJH_10510 0.60 -0.8
2,172,377 - OLJFJH_10510 0.60 +1.4
2,172,393 + OLJFJH_10510 0.62 -0.2
2,172,411 + OLJFJH_10510 0.64 +0.6
2,172,501 + OLJFJH_10510 0.74 -0.3
2,172,523 - OLJFJH_10510 0.76 +1.2
2,172,565 - OLJFJH_10510 0.81 -0.1
2,172,577 + OLJFJH_10510 0.82 -0.0
2,172,577 + OLJFJH_10510 0.82 -0.1
2,172,578 - OLJFJH_10510 0.82 +0.2
2,172,677 + -0.0
2,172,677 + +0.8
2,172,678 - +0.3
2,172,681 - +0.0
2,172,681 - -0.1

Or see this region's nucleotide sequence