Strain Fitness in Erwinia amylovora T8 around OLJFJH_09385

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_09380 and OLJFJH_09385 are separated by 256 nucleotidesOLJFJH_09385 and OLJFJH_09390 are separated by 690 nucleotides OLJFJH_09380: OLJFJH_09380 - RNA polymerase sigma factor RpoS, at 1,941,453 to 1,942,445 _09380 OLJFJH_09385: OLJFJH_09385 - DNA mismatch repair protein MutS, at 1,942,702 to 1,945,263 _09385 OLJFJH_09390: OLJFJH_09390 - Transposase, at 1,945,954 to 1,946,388 _09390 Position (kb) 1942 1943 1944 1945 1946Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 1941.748 kb on + strand, within OLJFJH_09380at 1941.748 kb on + strand, within OLJFJH_09380at 1941.749 kb on - strand, within OLJFJH_09380at 1941.749 kb on - strand, within OLJFJH_09380at 1942.013 kb on + strand, within OLJFJH_09380at 1942.013 kb on + strand, within OLJFJH_09380at 1942.014 kb on - strand, within OLJFJH_09380at 1942.014 kb on - strand, within OLJFJH_09380at 1942.062 kb on - strand, within OLJFJH_09380at 1942.110 kb on - strand, within OLJFJH_09380at 1942.110 kb on - strand, within OLJFJH_09380at 1942.122 kb on - strand, within OLJFJH_09380at 1942.197 kb on - strand, within OLJFJH_09380at 1942.214 kb on + strand, within OLJFJH_09380at 1942.214 kb on + strand, within OLJFJH_09380at 1942.295 kb on - strand, within OLJFJH_09380at 1942.400 kb on - strandat 1942.725 kb on - strandat 1942.725 kb on - strandat 1943.072 kb on + strand, within OLJFJH_09385at 1943.154 kb on - strand, within OLJFJH_09385at 1943.154 kb on - strand, within OLJFJH_09385at 1943.199 kb on - strand, within OLJFJH_09385at 1943.199 kb on - strand, within OLJFJH_09385at 1943.220 kb on + strand, within OLJFJH_09385at 1943.296 kb on - strand, within OLJFJH_09385at 1943.301 kb on + strand, within OLJFJH_09385at 1943.347 kb on - strand, within OLJFJH_09385at 1943.352 kb on + strand, within OLJFJH_09385at 1943.353 kb on - strand, within OLJFJH_09385at 1943.354 kb on + strand, within OLJFJH_09385at 1943.354 kb on + strand, within OLJFJH_09385at 1943.354 kb on + strand, within OLJFJH_09385at 1943.355 kb on - strand, within OLJFJH_09385at 1943.355 kb on - strand, within OLJFJH_09385at 1943.355 kb on - strand, within OLJFJH_09385at 1943.355 kb on - strand, within OLJFJH_09385at 1943.389 kb on - strand, within OLJFJH_09385at 1943.390 kb on + strand, within OLJFJH_09385at 1943.390 kb on + strand, within OLJFJH_09385at 1943.390 kb on + strand, within OLJFJH_09385at 1943.390 kb on + strand, within OLJFJH_09385at 1943.390 kb on + strand, within OLJFJH_09385at 1943.390 kb on + strand, within OLJFJH_09385at 1943.390 kb on + strand, within OLJFJH_09385at 1943.390 kb on + strand, within OLJFJH_09385at 1943.390 kb on + strand, within OLJFJH_09385at 1943.390 kb on + strand, within OLJFJH_09385at 1943.390 kb on + strand, within OLJFJH_09385at 1943.390 kb on + strand, within OLJFJH_09385at 1943.391 kb on - strand, within OLJFJH_09385at 1943.391 kb on - strand, within OLJFJH_09385at 1943.391 kb on - strand, within OLJFJH_09385at 1943.395 kb on - strand, within OLJFJH_09385at 1943.433 kb on + strand, within OLJFJH_09385at 1943.559 kb on - strand, within OLJFJH_09385at 1943.590 kb on - strand, within OLJFJH_09385at 1943.597 kb on - strand, within OLJFJH_09385at 1943.597 kb on - strand, within OLJFJH_09385at 1943.659 kb on - strand, within OLJFJH_09385at 1943.740 kb on + strand, within OLJFJH_09385at 1943.754 kb on + strand, within OLJFJH_09385at 1943.754 kb on + strand, within OLJFJH_09385at 1943.755 kb on - strand, within OLJFJH_09385at 1943.757 kb on - strand, within OLJFJH_09385at 1943.757 kb on - strand, within OLJFJH_09385at 1943.757 kb on - strand, within OLJFJH_09385at 1943.792 kb on + strand, within OLJFJH_09385at 1943.837 kb on + strand, within OLJFJH_09385at 1943.837 kb on + strand, within OLJFJH_09385at 1943.838 kb on - strand, within OLJFJH_09385at 1943.838 kb on - strand, within OLJFJH_09385at 1944.256 kb on + strand, within OLJFJH_09385at 1944.322 kb on - strand, within OLJFJH_09385at 1944.336 kb on + strand, within OLJFJH_09385at 1944.336 kb on + strand, within OLJFJH_09385at 1944.337 kb on - strand, within OLJFJH_09385at 1944.530 kb on + strand, within OLJFJH_09385at 1944.530 kb on + strand, within OLJFJH_09385at 1944.531 kb on - strand, within OLJFJH_09385at 1944.531 kb on - strand, within OLJFJH_09385at 1944.648 kb on - strand, within OLJFJH_09385at 1944.921 kb on + strand, within OLJFJH_09385at 1944.922 kb on - strand, within OLJFJH_09385at 1944.925 kb on + strand, within OLJFJH_09385at 1944.952 kb on - strand, within OLJFJH_09385at 1944.952 kb on - strand, within OLJFJH_09385at 1944.952 kb on - strand, within OLJFJH_09385at 1945.022 kb on + strandat 1945.022 kb on + strandat 1945.023 kb on - strandat 1945.040 kb on + strandat 1945.126 kb on - strandat 1945.136 kb on + strandat 1945.137 kb on - strandat 1945.171 kb on + strandat 1945.172 kb on - strandat 1945.204 kb on + strandat 1945.205 kb on - strandat 1945.209 kb on - strandat 1945.237 kb on + strandat 1945.335 kb on - strandat 1945.374 kb on - strandat 1945.376 kb on + strandat 1945.377 kb on - strandat 1945.377 kb on - strandat 1945.518 kb on - strandat 1945.536 kb on + strandat 1945.536 kb on + strandat 1945.536 kb on + strandat 1945.537 kb on - strandat 1945.582 kb on + strandat 1945.588 kb on + strandat 1945.608 kb on + strandat 1945.609 kb on - strandat 1945.613 kb on - strandat 1945.659 kb on - strandat 1945.784 kb on + strandat 1945.869 kb on - strandat 1946.211 kb on - strand, within OLJFJH_09390

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-8
remove
1,941,748 + OLJFJH_09380 0.30 -0.1
1,941,748 + OLJFJH_09380 0.30 +1.2
1,941,749 - OLJFJH_09380 0.30 +1.4
1,941,749 - OLJFJH_09380 0.30 -0.0
1,942,013 + OLJFJH_09380 0.56 +0.8
1,942,013 + OLJFJH_09380 0.56 +0.6
1,942,014 - OLJFJH_09380 0.56 +0.1
1,942,014 - OLJFJH_09380 0.56 +1.5
1,942,062 - OLJFJH_09380 0.61 -0.1
1,942,110 - OLJFJH_09380 0.66 -0.1
1,942,110 - OLJFJH_09380 0.66 +0.2
1,942,122 - OLJFJH_09380 0.67 +0.4
1,942,197 - OLJFJH_09380 0.75 -0.6
1,942,214 + OLJFJH_09380 0.77 +0.5
1,942,214 + OLJFJH_09380 0.77 -0.4
1,942,295 - OLJFJH_09380 0.85 +0.4
1,942,400 - -0.2
1,942,725 - +1.7
1,942,725 - +0.9
1,943,072 + OLJFJH_09385 0.14 +0.0
1,943,154 - OLJFJH_09385 0.18 +1.0
1,943,154 - OLJFJH_09385 0.18 +1.0
1,943,199 - OLJFJH_09385 0.19 +0.6
1,943,199 - OLJFJH_09385 0.19 +0.0
1,943,220 + OLJFJH_09385 0.20 +1.6
1,943,296 - OLJFJH_09385 0.23 +1.1
1,943,301 + OLJFJH_09385 0.23 -0.0
1,943,347 - OLJFJH_09385 0.25 +3.1
1,943,352 + OLJFJH_09385 0.25 +1.6
1,943,353 - OLJFJH_09385 0.25 +2.1
1,943,354 + OLJFJH_09385 0.25 +1.9
1,943,354 + OLJFJH_09385 0.25 +0.6
1,943,354 + OLJFJH_09385 0.25 +1.6
1,943,355 - OLJFJH_09385 0.25 +4.5
1,943,355 - OLJFJH_09385 0.25 +1.6
1,943,355 - OLJFJH_09385 0.25 +1.5
1,943,355 - OLJFJH_09385 0.25 -1.4
1,943,389 - OLJFJH_09385 0.27 +3.3
1,943,390 + OLJFJH_09385 0.27 -0.2
1,943,390 + OLJFJH_09385 0.27 -1.1
1,943,390 + OLJFJH_09385 0.27 +0.3
1,943,390 + OLJFJH_09385 0.27 -0.4
1,943,390 + OLJFJH_09385 0.27 +0.1
1,943,390 + OLJFJH_09385 0.27 +2.0
1,943,390 + OLJFJH_09385 0.27 -0.1
1,943,390 + OLJFJH_09385 0.27 -0.8
1,943,390 + OLJFJH_09385 0.27 -0.2
1,943,390 + OLJFJH_09385 0.27 +4.8
1,943,390 + OLJFJH_09385 0.27 -0.7
1,943,390 + OLJFJH_09385 0.27 -0.3
1,943,391 - OLJFJH_09385 0.27 +0.1
1,943,391 - OLJFJH_09385 0.27 +0.3
1,943,391 - OLJFJH_09385 0.27 +0.1
1,943,395 - OLJFJH_09385 0.27 +0.6
1,943,433 + OLJFJH_09385 0.29 +1.1
1,943,559 - OLJFJH_09385 0.33 +5.4
1,943,590 - OLJFJH_09385 0.35 +0.7
1,943,597 - OLJFJH_09385 0.35 +5.4
1,943,597 - OLJFJH_09385 0.35 -0.6
1,943,659 - OLJFJH_09385 0.37 +0.1
1,943,740 + OLJFJH_09385 0.41 -0.1
1,943,754 + OLJFJH_09385 0.41 +0.1
1,943,754 + OLJFJH_09385 0.41 +0.1
1,943,755 - OLJFJH_09385 0.41 +0.5
1,943,757 - OLJFJH_09385 0.41 +0.4
1,943,757 - OLJFJH_09385 0.41 +0.1
1,943,757 - OLJFJH_09385 0.41 +0.9
1,943,792 + OLJFJH_09385 0.43 +1.5
1,943,837 + OLJFJH_09385 0.44 -0.1
1,943,837 + OLJFJH_09385 0.44 -0.5
1,943,838 - OLJFJH_09385 0.44 -0.2
1,943,838 - OLJFJH_09385 0.44 +4.9
1,944,256 + OLJFJH_09385 0.61 +4.8
1,944,322 - OLJFJH_09385 0.63 +0.5
1,944,336 + OLJFJH_09385 0.64 +3.4
1,944,336 + OLJFJH_09385 0.64 +0.4
1,944,337 - OLJFJH_09385 0.64 -0.3
1,944,530 + OLJFJH_09385 0.71 +1.8
1,944,530 + OLJFJH_09385 0.71 +4.4
1,944,531 - OLJFJH_09385 0.71 +0.2
1,944,531 - OLJFJH_09385 0.71 -0.5
1,944,648 - OLJFJH_09385 0.76 +0.5
1,944,921 + OLJFJH_09385 0.87 +1.4
1,944,922 - OLJFJH_09385 0.87 +0.9
1,944,925 + OLJFJH_09385 0.87 -0.4
1,944,952 - OLJFJH_09385 0.88 +0.5
1,944,952 - OLJFJH_09385 0.88 +3.0
1,944,952 - OLJFJH_09385 0.88 -0.7
1,945,022 + -1.5
1,945,022 + +1.1
1,945,023 - -2.1
1,945,040 + +3.1
1,945,126 - +0.8
1,945,136 + +1.1
1,945,137 - +1.6
1,945,171 + +0.5
1,945,172 - +0.8
1,945,204 + +6.8
1,945,205 - -0.2
1,945,209 - -0.9
1,945,237 + +3.0
1,945,335 - +0.0
1,945,374 - -0.2
1,945,376 + +0.6
1,945,377 - -0.6
1,945,377 - +1.1
1,945,518 - +0.1
1,945,536 + +0.2
1,945,536 + -0.0
1,945,536 + +0.1
1,945,537 - +1.1
1,945,582 + -1.3
1,945,588 + +1.0
1,945,608 + +1.6
1,945,609 - -0.8
1,945,613 - -0.3
1,945,659 - -0.5
1,945,784 + +0.6
1,945,869 - -0.8
1,946,211 - OLJFJH_09390 0.59 -0.7

Or see this region's nucleotide sequence