Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_05560 and OLJFJH_05565 are separated by 19 nucleotides OLJFJH_05565 and OLJFJH_05570 are separated by 56 nucleotides OLJFJH_05570 and OLJFJH_05575 are separated by 259 nucleotides
OLJFJH_05560: OLJFJH_05560 - bifunctional GTP diphosphokinase/guanosine-3' 5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 1,133,229 to 1,135,352
_05560
OLJFJH_05565: OLJFJH_05565 - DNA-directed RNA polymerase subunit omega, at 1,135,372 to 1,135,647
_05565
OLJFJH_05570: OLJFJH_05570 - guanylate kinase, at 1,135,704 to 1,136,327
_05570
OLJFJH_05575: OLJFJH_05575 - NAD-dependent DNA ligase LigB, at 1,136,587 to 1,138,251
_05575
Position (kb) 1135
1136
1137 Strain fitness (log2 ratio) -1
0
1
2 at 1135.349 kb on - strand at 1135.619 kb on - strand, within OLJFJH_05565 at 1135.648 kb on - strand at 1135.648 kb on - strand at 1135.657 kb on - strand at 1136.375 kb on - strand at 1136.375 kb on - strand at 1136.377 kb on - strand at 1136.377 kb on - strand at 1136.423 kb on + strand at 1136.449 kb on + strand at 1136.536 kb on + strand at 1136.537 kb on - strand at 1136.537 kb on - strand at 1136.537 kb on - strand at 1136.567 kb on + strand at 1136.568 kb on - strand at 1136.568 kb on - strand at 1136.594 kb on - strand at 1136.719 kb on + strand at 1136.872 kb on - strand, within OLJFJH_05575 at 1136.881 kb on - strand, within OLJFJH_05575 at 1137.125 kb on - strand, within OLJFJH_05575
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-8 remove 1,135,349 - -0.9 1,135,619 - OLJFJH_05565 0.89 -0.3 1,135,648 - -1.4 1,135,648 - +0.3 1,135,657 - +0.0 1,136,375 - +1.0 1,136,375 - +0.2 1,136,377 - -0.4 1,136,377 - -1.0 1,136,423 + +0.0 1,136,449 + -0.6 1,136,536 + +0.8 1,136,537 - -0.0 1,136,537 - -0.1 1,136,537 - +0.2 1,136,567 + +2.0 1,136,568 - +0.3 1,136,568 - -0.3 1,136,594 - -0.0 1,136,719 + -0.7 1,136,872 - OLJFJH_05575 0.17 -0.3 1,136,881 - OLJFJH_05575 0.18 +0.1 1,137,125 - OLJFJH_05575 0.32 +0.5
Or see this region's nucleotide sequence