Strain Fitness in Erwinia amylovora T8 around OLJFJH_02475

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02470 and OLJFJH_02475 are separated by 466 nucleotidesOLJFJH_02475 and OLJFJH_02480 are separated by 82 nucleotidesOLJFJH_02480 and OLJFJH_02485 are separated by 136 nucleotides OLJFJH_02470: OLJFJH_02470 - ribonuclease R, at 441,545 to 443,977 _02470 OLJFJH_02475: OLJFJH_02475 - adenylosuccinate synthase, at 444,444 to 445,781 _02475 OLJFJH_02480: OLJFJH_02480 - DUF2065 domain-containing protein, at 445,864 to 446,004 _02480 OLJFJH_02485: OLJFJH_02485 - protease modulator HflC, at 446,141 to 447,145 _02485 Position (kb) 444 445 446Strain fitness (log2 ratio) -2 -1 0 1 2at 443.450 kb on + strand, within OLJFJH_02470at 443.450 kb on + strand, within OLJFJH_02470at 443.450 kb on + strand, within OLJFJH_02470at 443.450 kb on + strand, within OLJFJH_02470at 443.450 kb on + strand, within OLJFJH_02470at 443.450 kb on + strand, within OLJFJH_02470at 443.450 kb on + strand, within OLJFJH_02470at 443.450 kb on + strand, within OLJFJH_02470at 443.451 kb on - strand, within OLJFJH_02470at 443.512 kb on - strand, within OLJFJH_02470at 443.534 kb on - strand, within OLJFJH_02470at 443.652 kb on + strand, within OLJFJH_02470at 443.716 kb on + strand, within OLJFJH_02470at 444.013 kb on + strandat 444.215 kb on - strandat 444.315 kb on - strandat 444.317 kb on + strandat 444.318 kb on - strandat 444.318 kb on - strandat 444.344 kb on + strandat 444.345 kb on - strandat 444.346 kb on + strandat 444.346 kb on + strandat 444.346 kb on + strandat 444.346 kb on + strandat 444.346 kb on + strandat 444.347 kb on - strandat 444.347 kb on - strandat 444.347 kb on - strandat 444.350 kb on + strandat 444.350 kb on + strandat 444.351 kb on - strandat 444.351 kb on - strandat 444.407 kb on + strandat 444.407 kb on + strandat 444.408 kb on - strandat 444.445 kb on + strandat 444.445 kb on + strandat 444.446 kb on - strandat 445.777 kb on - strandat 445.830 kb on - strandat 445.833 kb on + strandat 445.885 kb on + strand, within OLJFJH_02480at 445.893 kb on - strand, within OLJFJH_02480at 446.023 kb on + strandat 446.058 kb on + strandat 446.059 kb on - strandat 446.066 kb on + strandat 446.238 kb on + strandat 446.265 kb on + strand, within OLJFJH_02485at 446.265 kb on + strand, within OLJFJH_02485at 446.382 kb on + strand, within OLJFJH_02485at 446.467 kb on + strand, within OLJFJH_02485at 446.467 kb on + strand, within OLJFJH_02485at 446.467 kb on + strand, within OLJFJH_02485at 446.467 kb on + strand, within OLJFJH_02485at 446.468 kb on - strand, within OLJFJH_02485at 446.468 kb on - strand, within OLJFJH_02485at 446.475 kb on + strand, within OLJFJH_02485at 446.475 kb on + strand, within OLJFJH_02485at 446.475 kb on + strand, within OLJFJH_02485at 446.475 kb on + strand, within OLJFJH_02485at 446.475 kb on + strand, within OLJFJH_02485at 446.475 kb on + strand, within OLJFJH_02485at 446.475 kb on + strand, within OLJFJH_02485at 446.475 kb on + strand, within OLJFJH_02485at 446.475 kb on + strand, within OLJFJH_02485at 446.476 kb on - strand, within OLJFJH_02485at 446.476 kb on - strand, within OLJFJH_02485at 446.476 kb on - strand, within OLJFJH_02485at 446.476 kb on - strand, within OLJFJH_02485at 446.476 kb on - strand, within OLJFJH_02485at 446.476 kb on - strand, within OLJFJH_02485at 446.519 kb on - strand, within OLJFJH_02485at 446.519 kb on - strand, within OLJFJH_02485at 446.693 kb on + strand, within OLJFJH_02485at 446.694 kb on - strand, within OLJFJH_02485at 446.694 kb on - strand, within OLJFJH_02485at 446.702 kb on - strand, within OLJFJH_02485

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-8
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443,450 + OLJFJH_02470 0.78 -1.2
443,450 + OLJFJH_02470 0.78 +1.1
443,450 + OLJFJH_02470 0.78 -1.6
443,450 + OLJFJH_02470 0.78 +0.9
443,450 + OLJFJH_02470 0.78 -0.9
443,450 + OLJFJH_02470 0.78 -0.6
443,450 + OLJFJH_02470 0.78 -0.5
443,450 + OLJFJH_02470 0.78 -0.2
443,451 - OLJFJH_02470 0.78 -0.3
443,512 - OLJFJH_02470 0.81 -1.4
443,534 - OLJFJH_02470 0.82 -1.5
443,652 + OLJFJH_02470 0.87 -1.8
443,716 + OLJFJH_02470 0.89 -1.6
444,013 + +0.1
444,215 - +0.0
444,315 - -1.3
444,317 + -0.4
444,318 - -0.5
444,318 - -1.4
444,344 + +1.9
444,345 - +0.8
444,346 + -0.7
444,346 + -0.1
444,346 + -1.1
444,346 + -0.1
444,346 + -2.1
444,347 - -1.0
444,347 - +0.4
444,347 - +2.3
444,350 + -0.2
444,350 + +0.6
444,351 - +0.1
444,351 - +1.4
444,407 + +0.3
444,407 + -0.3
444,408 - -0.6
444,445 + -0.5
444,445 + +1.2
444,446 - -0.0
445,777 - -2.5
445,830 - -0.4
445,833 + +0.4
445,885 + OLJFJH_02480 0.15 +0.2
445,893 - OLJFJH_02480 0.21 -0.1
446,023 + -0.1
446,058 + -1.2
446,059 - +1.1
446,066 + +0.3
446,238 + -0.8
446,265 + OLJFJH_02485 0.12 +0.2
446,265 + OLJFJH_02485 0.12 -1.7
446,382 + OLJFJH_02485 0.24 +0.0
446,467 + OLJFJH_02485 0.32 -1.0
446,467 + OLJFJH_02485 0.32 +0.0
446,467 + OLJFJH_02485 0.32 +0.4
446,467 + OLJFJH_02485 0.32 +1.0
446,468 - OLJFJH_02485 0.33 -2.4
446,468 - OLJFJH_02485 0.33 -1.3
446,475 + OLJFJH_02485 0.33 -1.4
446,475 + OLJFJH_02485 0.33 -0.5
446,475 + OLJFJH_02485 0.33 +1.6
446,475 + OLJFJH_02485 0.33 +0.6
446,475 + OLJFJH_02485 0.33 -0.6
446,475 + OLJFJH_02485 0.33 -0.2
446,475 + OLJFJH_02485 0.33 -0.9
446,475 + OLJFJH_02485 0.33 -1.9
446,475 + OLJFJH_02485 0.33 -0.5
446,476 - OLJFJH_02485 0.33 -0.2
446,476 - OLJFJH_02485 0.33 -1.0
446,476 - OLJFJH_02485 0.33 -0.5
446,476 - OLJFJH_02485 0.33 -1.1
446,476 - OLJFJH_02485 0.33 -0.8
446,476 - OLJFJH_02485 0.33 -0.4
446,519 - OLJFJH_02485 0.38 -0.5
446,519 - OLJFJH_02485 0.38 -1.0
446,693 + OLJFJH_02485 0.55 -2.0
446,694 - OLJFJH_02485 0.55 -0.0
446,694 - OLJFJH_02485 0.55 -0.9
446,702 - OLJFJH_02485 0.56 -1.8

Or see this region's nucleotide sequence