Strain Fitness in Erwinia amylovora T8 around OLJFJH_02415

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02410 and OLJFJH_02415 are separated by 238 nucleotidesOLJFJH_02415 and OLJFJH_02420 are separated by 52 nucleotidesOLJFJH_02420 and OLJFJH_02425 are separated by 325 nucleotides OLJFJH_02410: OLJFJH_02410 - 3'(2') 5'-bisphosphate nucleotidase CysQ, at 431,248 to 431,988 _02410 OLJFJH_02415: OLJFJH_02415 - bifunctional 2' 3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase, at 432,227 to 434,161 _02415 OLJFJH_02420: OLJFJH_02420 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 434,214 to 434,834 _02420 OLJFJH_02425: OLJFJH_02425 - Opacity-associated protein A, at 435,160 to 435,708 _02425 Position (kb) 432 433 434 435Strain fitness (log2 ratio) -2 -1 0 1 2at 431.382 kb on + strand, within OLJFJH_02410at 431.386 kb on - strand, within OLJFJH_02410at 431.492 kb on + strand, within OLJFJH_02410at 431.569 kb on + strand, within OLJFJH_02410at 431.570 kb on - strand, within OLJFJH_02410at 431.570 kb on - strand, within OLJFJH_02410at 431.570 kb on - strand, within OLJFJH_02410at 431.570 kb on - strand, within OLJFJH_02410at 431.618 kb on + strand, within OLJFJH_02410at 431.619 kb on - strand, within OLJFJH_02410at 431.619 kb on - strand, within OLJFJH_02410at 431.643 kb on - strand, within OLJFJH_02410at 431.685 kb on + strand, within OLJFJH_02410at 431.833 kb on + strand, within OLJFJH_02410at 431.834 kb on - strand, within OLJFJH_02410at 431.930 kb on + strandat 431.930 kb on + strandat 431.931 kb on - strandat 431.931 kb on - strandat 432.054 kb on - strandat 432.177 kb on - strandat 432.224 kb on + strandat 432.224 kb on + strandat 432.224 kb on + strandat 432.225 kb on - strandat 432.225 kb on - strandat 432.225 kb on - strandat 432.225 kb on - strandat 432.225 kb on - strandat 432.331 kb on + strandat 432.332 kb on - strandat 432.332 kb on - strandat 432.332 kb on - strandat 432.347 kb on + strandat 432.348 kb on - strandat 432.350 kb on + strandat 432.351 kb on - strandat 432.370 kb on + strandat 432.374 kb on + strandat 432.374 kb on + strandat 432.375 kb on - strandat 432.375 kb on - strandat 432.375 kb on - strandat 432.375 kb on - strandat 432.482 kb on + strand, within OLJFJH_02415at 432.482 kb on + strand, within OLJFJH_02415at 432.482 kb on + strand, within OLJFJH_02415at 432.482 kb on + strand, within OLJFJH_02415at 432.482 kb on + strand, within OLJFJH_02415at 432.482 kb on + strand, within OLJFJH_02415at 432.483 kb on - strand, within OLJFJH_02415at 432.483 kb on - strand, within OLJFJH_02415at 432.483 kb on - strand, within OLJFJH_02415at 432.483 kb on - strand, within OLJFJH_02415at 432.483 kb on - strand, within OLJFJH_02415at 432.484 kb on + strand, within OLJFJH_02415at 432.484 kb on + strand, within OLJFJH_02415at 432.485 kb on - strand, within OLJFJH_02415at 432.485 kb on - strand, within OLJFJH_02415at 432.529 kb on + strand, within OLJFJH_02415at 432.552 kb on - strand, within OLJFJH_02415at 432.584 kb on - strand, within OLJFJH_02415at 432.600 kb on - strand, within OLJFJH_02415at 432.635 kb on + strand, within OLJFJH_02415at 432.636 kb on - strand, within OLJFJH_02415at 432.636 kb on - strand, within OLJFJH_02415at 432.637 kb on + strand, within OLJFJH_02415at 432.638 kb on - strand, within OLJFJH_02415at 432.698 kb on - strand, within OLJFJH_02415at 432.752 kb on + strand, within OLJFJH_02415at 432.755 kb on - strand, within OLJFJH_02415at 432.778 kb on + strand, within OLJFJH_02415at 432.827 kb on - strand, within OLJFJH_02415at 432.985 kb on - strand, within OLJFJH_02415at 433.048 kb on + strand, within OLJFJH_02415at 433.190 kb on + strand, within OLJFJH_02415at 433.191 kb on - strand, within OLJFJH_02415at 433.322 kb on + strand, within OLJFJH_02415at 433.323 kb on - strand, within OLJFJH_02415at 433.323 kb on - strand, within OLJFJH_02415at 433.397 kb on - strand, within OLJFJH_02415at 433.468 kb on + strand, within OLJFJH_02415at 433.487 kb on + strand, within OLJFJH_02415at 433.487 kb on + strand, within OLJFJH_02415at 433.487 kb on + strand, within OLJFJH_02415at 433.487 kb on + strand, within OLJFJH_02415at 433.487 kb on + strand, within OLJFJH_02415at 433.487 kb on + strand, within OLJFJH_02415at 433.488 kb on - strand, within OLJFJH_02415at 433.488 kb on - strand, within OLJFJH_02415at 433.488 kb on - strand, within OLJFJH_02415at 433.513 kb on + strand, within OLJFJH_02415at 433.513 kb on + strand, within OLJFJH_02415at 433.513 kb on + strand, within OLJFJH_02415at 433.514 kb on - strand, within OLJFJH_02415at 433.588 kb on + strand, within OLJFJH_02415at 433.639 kb on + strand, within OLJFJH_02415at 433.682 kb on + strand, within OLJFJH_02415at 433.682 kb on + strand, within OLJFJH_02415at 433.742 kb on + strand, within OLJFJH_02415at 433.743 kb on - strand, within OLJFJH_02415at 433.743 kb on - strand, within OLJFJH_02415at 433.743 kb on - strand, within OLJFJH_02415at 433.849 kb on + strand, within OLJFJH_02415at 433.850 kb on - strand, within OLJFJH_02415at 433.853 kb on + strand, within OLJFJH_02415at 433.854 kb on - strand, within OLJFJH_02415at 433.943 kb on + strand, within OLJFJH_02415at 433.944 kb on - strand, within OLJFJH_02415at 434.080 kb on + strandat 434.111 kb on + strandat 434.111 kb on + strandat 434.111 kb on + strandat 434.113 kb on + strandat 434.113 kb on + strandat 434.113 kb on + strandat 434.114 kb on - strandat 434.114 kb on - strandat 434.144 kb on + strandat 434.152 kb on - strandat 434.160 kb on - strandat 434.160 kb on - strandat 434.163 kb on + strandat 434.163 kb on + strandat 434.163 kb on + strandat 434.163 kb on + strandat 434.164 kb on - strandat 434.164 kb on - strandat 434.164 kb on - strandat 434.164 kb on - strandat 434.164 kb on - strandat 434.164 kb on - strandat 434.164 kb on - strandat 434.166 kb on - strandat 434.293 kb on + strand, within OLJFJH_02420at 434.455 kb on + strand, within OLJFJH_02420at 434.455 kb on + strand, within OLJFJH_02420at 434.456 kb on - strand, within OLJFJH_02420at 434.456 kb on - strand, within OLJFJH_02420at 434.466 kb on + strand, within OLJFJH_02420at 434.467 kb on - strand, within OLJFJH_02420at 434.670 kb on + strand, within OLJFJH_02420at 434.670 kb on + strand, within OLJFJH_02420at 434.671 kb on - strand, within OLJFJH_02420at 434.671 kb on - strand, within OLJFJH_02420at 434.671 kb on - strand, within OLJFJH_02420at 434.671 kb on - strand, within OLJFJH_02420at 434.671 kb on - strand, within OLJFJH_02420at 434.875 kb on + strandat 434.875 kb on + strandat 434.944 kb on + strandat 434.944 kb on + strandat 434.945 kb on - strandat 435.017 kb on + strandat 435.022 kb on + strandat 435.029 kb on + strandat 435.097 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-8
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431,382 + OLJFJH_02410 0.18 -0.3
431,386 - OLJFJH_02410 0.19 -1.4
431,492 + OLJFJH_02410 0.33 -0.3
431,569 + OLJFJH_02410 0.43 +1.2
431,570 - OLJFJH_02410 0.43 -1.3
431,570 - OLJFJH_02410 0.43 +0.9
431,570 - OLJFJH_02410 0.43 +0.4
431,570 - OLJFJH_02410 0.43 +0.0
431,618 + OLJFJH_02410 0.50 -0.3
431,619 - OLJFJH_02410 0.50 +0.3
431,619 - OLJFJH_02410 0.50 -0.1
431,643 - OLJFJH_02410 0.53 -0.9
431,685 + OLJFJH_02410 0.59 +0.1
431,833 + OLJFJH_02410 0.79 -0.6
431,834 - OLJFJH_02410 0.79 +0.7
431,930 + -1.0
431,930 + +0.4
431,931 - +0.2
431,931 - -0.8
432,054 - -0.2
432,177 - +0.1
432,224 + +0.3
432,224 + +0.2
432,224 + -0.1
432,225 - +0.0
432,225 - +0.2
432,225 - -0.0
432,225 - +1.1
432,225 - -0.2
432,331 + +0.1
432,332 - -2.4
432,332 - -0.0
432,332 - -0.2
432,347 + -0.2
432,348 - -1.8
432,350 + -1.3
432,351 - +0.1
432,370 + -1.6
432,374 + -0.3
432,374 + +1.8
432,375 - +0.6
432,375 - -0.7
432,375 - +0.6
432,375 - +0.2
432,482 + OLJFJH_02415 0.13 -0.8
432,482 + OLJFJH_02415 0.13 -0.6
432,482 + OLJFJH_02415 0.13 -0.8
432,482 + OLJFJH_02415 0.13 +0.4
432,482 + OLJFJH_02415 0.13 -0.2
432,482 + OLJFJH_02415 0.13 +0.7
432,483 - OLJFJH_02415 0.13 +0.2
432,483 - OLJFJH_02415 0.13 +0.5
432,483 - OLJFJH_02415 0.13 +0.0
432,483 - OLJFJH_02415 0.13 +0.4
432,483 - OLJFJH_02415 0.13 -1.1
432,484 + OLJFJH_02415 0.13 +0.1
432,484 + OLJFJH_02415 0.13 -1.1
432,485 - OLJFJH_02415 0.13 -0.3
432,485 - OLJFJH_02415 0.13 +0.6
432,529 + OLJFJH_02415 0.16 -0.4
432,552 - OLJFJH_02415 0.17 +0.2
432,584 - OLJFJH_02415 0.18 +0.0
432,600 - OLJFJH_02415 0.19 +0.6
432,635 + OLJFJH_02415 0.21 +0.3
432,636 - OLJFJH_02415 0.21 +0.5
432,636 - OLJFJH_02415 0.21 -0.3
432,637 + OLJFJH_02415 0.21 -1.0
432,638 - OLJFJH_02415 0.21 +0.5
432,698 - OLJFJH_02415 0.24 +0.1
432,752 + OLJFJH_02415 0.27 -0.4
432,755 - OLJFJH_02415 0.27 -0.6
432,778 + OLJFJH_02415 0.28 -0.2
432,827 - OLJFJH_02415 0.31 -0.6
432,985 - OLJFJH_02415 0.39 -0.8
433,048 + OLJFJH_02415 0.42 -0.2
433,190 + OLJFJH_02415 0.50 +0.6
433,191 - OLJFJH_02415 0.50 +1.1
433,322 + OLJFJH_02415 0.57 +0.2
433,323 - OLJFJH_02415 0.57 -0.5
433,323 - OLJFJH_02415 0.57 +0.4
433,397 - OLJFJH_02415 0.60 +2.3
433,468 + OLJFJH_02415 0.64 +0.3
433,487 + OLJFJH_02415 0.65 -1.7
433,487 + OLJFJH_02415 0.65 +0.0
433,487 + OLJFJH_02415 0.65 -0.4
433,487 + OLJFJH_02415 0.65 -1.2
433,487 + OLJFJH_02415 0.65 -0.1
433,487 + OLJFJH_02415 0.65 +0.7
433,488 - OLJFJH_02415 0.65 -0.7
433,488 - OLJFJH_02415 0.65 +0.1
433,488 - OLJFJH_02415 0.65 -0.4
433,513 + OLJFJH_02415 0.66 -0.2
433,513 + OLJFJH_02415 0.66 -0.2
433,513 + OLJFJH_02415 0.66 +0.9
433,514 - OLJFJH_02415 0.67 -0.7
433,588 + OLJFJH_02415 0.70 -0.3
433,639 + OLJFJH_02415 0.73 +0.2
433,682 + OLJFJH_02415 0.75 -0.1
433,682 + OLJFJH_02415 0.75 -0.5
433,742 + OLJFJH_02415 0.78 +0.5
433,743 - OLJFJH_02415 0.78 -0.1
433,743 - OLJFJH_02415 0.78 -0.2
433,743 - OLJFJH_02415 0.78 +0.3
433,849 + OLJFJH_02415 0.84 -0.4
433,850 - OLJFJH_02415 0.84 -0.2
433,853 + OLJFJH_02415 0.84 -0.0
433,854 - OLJFJH_02415 0.84 -0.8
433,943 + OLJFJH_02415 0.89 -0.8
433,944 - OLJFJH_02415 0.89 -0.2
434,080 + -1.7
434,111 + -0.8
434,111 + +0.9
434,111 + -0.4
434,113 + -0.3
434,113 + +0.7
434,113 + -0.4
434,114 - -0.5
434,114 - +0.4
434,144 + -1.3
434,152 - -0.2
434,160 - +0.7
434,160 - +0.1
434,163 + +0.4
434,163 + -0.4
434,163 + -1.4
434,163 + -1.1
434,164 - +0.7
434,164 - -0.5
434,164 - +0.2
434,164 - +0.2
434,164 - -0.7
434,164 - -0.1
434,164 - -0.7
434,166 - +0.3
434,293 + OLJFJH_02420 0.13 -0.9
434,455 + OLJFJH_02420 0.39 -0.1
434,455 + OLJFJH_02420 0.39 -2.4
434,456 - OLJFJH_02420 0.39 -1.9
434,456 - OLJFJH_02420 0.39 -0.6
434,466 + OLJFJH_02420 0.41 -0.2
434,467 - OLJFJH_02420 0.41 -0.9
434,670 + OLJFJH_02420 0.73 -0.1
434,670 + OLJFJH_02420 0.73 -0.4
434,671 - OLJFJH_02420 0.74 -1.1
434,671 - OLJFJH_02420 0.74 -1.0
434,671 - OLJFJH_02420 0.74 -1.1
434,671 - OLJFJH_02420 0.74 -1.8
434,671 - OLJFJH_02420 0.74 -1.4
434,875 + -1.6
434,875 + -0.4
434,944 + +1.5
434,944 + -0.1
434,945 - +0.3
435,017 + +0.5
435,022 + +0.1
435,029 + +0.4
435,097 - -1.6

Or see this region's nucleotide sequence