Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_02280 and OLJFJH_02285 are separated by 62 nucleotides OLJFJH_02285 and OLJFJH_02290 overlap by 43 nucleotides OLJFJH_02290 and OLJFJH_02295 are separated by 30 nucleotides OLJFJH_02295 and OLJFJH_02300 are separated by 10 nucleotides
OLJFJH_02280: OLJFJH_02280 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 401,927 to 402,790
_02280
OLJFJH_02285: OLJFJH_02285 - penicillin-binding protein activator, at 402,853 to 404,877
_02285
OLJFJH_02290: OLJFJH_02290 - YraN family protein, at 404,835 to 405,227
_02290
OLJFJH_02295: OLJFJH_02295 - DnaA initiator-associating protein DiaA, at 405,258 to 405,848
_02295
OLJFJH_02300: OLJFJH_02300 - division/outer membrane stress-associated lipid-binding lipoprotein, at 405,859 to 406,431
_02300
Position (kb) 402
403
404
405 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 401.956 kb on + strand at 401.956 kb on + strand at 401.956 kb on + strand at 401.956 kb on + strand at 401.957 kb on - strand at 401.957 kb on - strand at 401.957 kb on - strand at 401.957 kb on - strand at 401.957 kb on - strand at 401.957 kb on - strand at 401.957 kb on - strand at 401.958 kb on + strand at 401.958 kb on + strand at 401.958 kb on + strand at 401.958 kb on + strand at 401.959 kb on - strand at 401.959 kb on - strand at 401.959 kb on - strand at 401.959 kb on - strand at 401.959 kb on - strand at 401.959 kb on - strand at 401.961 kb on - strand at 402.178 kb on + strand, within OLJFJH_02280 at 402.219 kb on + strand, within OLJFJH_02280 at 402.220 kb on - strand, within OLJFJH_02280 at 402.389 kb on + strand, within OLJFJH_02280 at 402.497 kb on - strand, within OLJFJH_02280 at 402.655 kb on + strand, within OLJFJH_02280 at 402.655 kb on + strand, within OLJFJH_02280 at 402.655 kb on + strand, within OLJFJH_02280 at 402.655 kb on + strand, within OLJFJH_02280 at 402.655 kb on + strand, within OLJFJH_02280 at 402.656 kb on - strand, within OLJFJH_02280 at 402.656 kb on - strand, within OLJFJH_02280 at 402.656 kb on - strand, within OLJFJH_02280 at 402.747 kb on + strand at 402.747 kb on + strand at 402.747 kb on + strand at 402.747 kb on + strand at 402.748 kb on - strand at 402.748 kb on - strand at 402.748 kb on - strand at 402.748 kb on - strand at 402.766 kb on + strand at 402.767 kb on - strand at 402.817 kb on - strand at 402.852 kb on + strand at 402.852 kb on + strand at 402.853 kb on - strand at 402.869 kb on + strand at 402.870 kb on - strand at 402.997 kb on + strand at 402.998 kb on - strand at 403.000 kb on + strand at 403.000 kb on + strand at 403.001 kb on - strand at 403.032 kb on + strand at 403.053 kb on - strand at 403.083 kb on + strand, within OLJFJH_02285 at 403.083 kb on + strand, within OLJFJH_02285 at 403.084 kb on - strand, within OLJFJH_02285 at 403.179 kb on + strand, within OLJFJH_02285 at 403.267 kb on + strand, within OLJFJH_02285 at 403.324 kb on + strand, within OLJFJH_02285 at 403.324 kb on + strand, within OLJFJH_02285 at 403.324 kb on + strand, within OLJFJH_02285 at 403.324 kb on + strand, within OLJFJH_02285 at 403.325 kb on - strand, within OLJFJH_02285 at 403.435 kb on - strand, within OLJFJH_02285 at 403.469 kb on + strand, within OLJFJH_02285 at 403.469 kb on + strand, within OLJFJH_02285 at 403.486 kb on + strand, within OLJFJH_02285 at 403.486 kb on + strand, within OLJFJH_02285 at 403.488 kb on + strand, within OLJFJH_02285 at 403.489 kb on - strand, within OLJFJH_02285 at 403.489 kb on - strand, within OLJFJH_02285 at 403.555 kb on + strand, within OLJFJH_02285 at 403.555 kb on + strand, within OLJFJH_02285 at 403.556 kb on - strand, within OLJFJH_02285 at 403.557 kb on + strand, within OLJFJH_02285 at 403.557 kb on + strand, within OLJFJH_02285 at 403.558 kb on - strand, within OLJFJH_02285 at 403.558 kb on - strand, within OLJFJH_02285 at 403.607 kb on + strand, within OLJFJH_02285 at 403.607 kb on + strand, within OLJFJH_02285 at 403.607 kb on + strand, within OLJFJH_02285 at 403.608 kb on - strand, within OLJFJH_02285 at 403.608 kb on - strand, within OLJFJH_02285 at 403.627 kb on - strand, within OLJFJH_02285 at 403.670 kb on - strand, within OLJFJH_02285 at 403.916 kb on - strand, within OLJFJH_02285 at 403.916 kb on - strand, within OLJFJH_02285 at 403.949 kb on + strand, within OLJFJH_02285 at 403.950 kb on - strand, within OLJFJH_02285 at 403.950 kb on - strand, within OLJFJH_02285 at 404.013 kb on + strand, within OLJFJH_02285 at 404.041 kb on - strand, within OLJFJH_02285 at 404.088 kb on + strand, within OLJFJH_02285 at 404.095 kb on + strand, within OLJFJH_02285 at 404.095 kb on + strand, within OLJFJH_02285 at 404.142 kb on + strand, within OLJFJH_02285 at 404.143 kb on - strand, within OLJFJH_02285 at 404.143 kb on - strand, within OLJFJH_02285 at 404.143 kb on - strand, within OLJFJH_02285 at 404.143 kb on - strand, within OLJFJH_02285 at 404.143 kb on - strand, within OLJFJH_02285 at 404.143 kb on - strand, within OLJFJH_02285 at 404.143 kb on - strand, within OLJFJH_02285 at 404.143 kb on - strand, within OLJFJH_02285 at 404.143 kb on - strand, within OLJFJH_02285 at 404.143 kb on - strand, within OLJFJH_02285 at 404.143 kb on - strand, within OLJFJH_02285 at 404.455 kb on + strand, within OLJFJH_02285 at 404.456 kb on - strand, within OLJFJH_02285 at 404.456 kb on - strand, within OLJFJH_02285 at 404.456 kb on - strand, within OLJFJH_02285 at 404.456 kb on - strand, within OLJFJH_02285 at 404.456 kb on - strand, within OLJFJH_02285 at 404.457 kb on + strand, within OLJFJH_02285 at 404.458 kb on - strand, within OLJFJH_02285 at 404.491 kb on - strand, within OLJFJH_02285 at 404.512 kb on - strand, within OLJFJH_02285 at 404.679 kb on + strand at 404.679 kb on + strand at 404.680 kb on - strand at 404.680 kb on - strand at 404.683 kb on + strand at 404.683 kb on + strand at 404.831 kb on + strand at 404.832 kb on - strand at 404.832 kb on - strand at 404.832 kb on - strand at 404.835 kb on - strand at 405.028 kb on + strand, within OLJFJH_02290 at 405.028 kb on + strand, within OLJFJH_02290 at 405.028 kb on + strand, within OLJFJH_02290 at 405.029 kb on - strand, within OLJFJH_02290 at 405.029 kb on - strand, within OLJFJH_02290 at 405.237 kb on + strand at 405.238 kb on - strand at 405.293 kb on + strand at 405.294 kb on - strand at 405.444 kb on - strand, within OLJFJH_02295 at 405.528 kb on - strand, within OLJFJH_02295 at 405.552 kb on + strand, within OLJFJH_02295 at 405.552 kb on + strand, within OLJFJH_02295 at 405.553 kb on - strand, within OLJFJH_02295 at 405.553 kb on - strand, within OLJFJH_02295 at 405.644 kb on - strand, within OLJFJH_02295 at 405.783 kb on - strand, within OLJFJH_02295 at 405.783 kb on - strand, within OLJFJH_02295 at 405.811 kb on + strand at 405.819 kb on - strand at 405.869 kb on + strand at 405.873 kb on + strand at 405.873 kb on + strand at 405.873 kb on + strand at 405.873 kb on + strand at 405.873 kb on + strand at 405.874 kb on - strand at 405.874 kb on - strand at 405.874 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-8 remove 401,956 + +0.7 401,956 + +1.3 401,956 + +0.6 401,956 + -0.3 401,957 - +1.4 401,957 - +1.1 401,957 - +1.0 401,957 - +0.5 401,957 - -0.2 401,957 - +1.5 401,957 - +0.7 401,958 + +0.3 401,958 + +0.2 401,958 + +0.3 401,958 + +1.1 401,959 - +1.3 401,959 - -0.1 401,959 - +0.1 401,959 - +0.5 401,959 - +1.4 401,959 - -0.0 401,961 - -1.7 402,178 + OLJFJH_02280 0.29 +0.7 402,219 + OLJFJH_02280 0.34 -0.2 402,220 - OLJFJH_02280 0.34 +0.6 402,389 + OLJFJH_02280 0.53 +0.4 402,497 - OLJFJH_02280 0.66 +1.6 402,655 + OLJFJH_02280 0.84 +0.9 402,655 + OLJFJH_02280 0.84 +1.4 402,655 + OLJFJH_02280 0.84 +0.4 402,655 + OLJFJH_02280 0.84 +0.6 402,655 + OLJFJH_02280 0.84 +1.7 402,656 - OLJFJH_02280 0.84 +1.3 402,656 - OLJFJH_02280 0.84 +1.7 402,656 - OLJFJH_02280 0.84 +0.3 402,747 + +0.3 402,747 + -0.4 402,747 + +0.3 402,747 + +1.6 402,748 - +0.6 402,748 - +0.9 402,748 - +0.3 402,748 - +0.3 402,766 + -0.5 402,767 - +0.5 402,817 - +1.4 402,852 + +3.0 402,852 + +4.0 402,853 - +3.3 402,869 + +3.0 402,870 - +2.8 402,997 + +2.1 402,998 - +4.0 403,000 + +2.6 403,000 + +4.2 403,001 - +3.3 403,032 + +2.8 403,053 - +2.5 403,083 + OLJFJH_02285 0.11 +3.0 403,083 + OLJFJH_02285 0.11 +2.1 403,084 - OLJFJH_02285 0.11 +2.7 403,179 + OLJFJH_02285 0.16 +2.6 403,267 + OLJFJH_02285 0.20 +2.6 403,324 + OLJFJH_02285 0.23 +2.3 403,324 + OLJFJH_02285 0.23 +2.6 403,324 + OLJFJH_02285 0.23 +3.2 403,324 + OLJFJH_02285 0.23 +2.1 403,325 - OLJFJH_02285 0.23 +3.0 403,435 - OLJFJH_02285 0.29 +1.4 403,469 + OLJFJH_02285 0.30 +1.4 403,469 + OLJFJH_02285 0.30 +3.6 403,486 + OLJFJH_02285 0.31 +2.4 403,486 + OLJFJH_02285 0.31 +0.0 403,488 + OLJFJH_02285 0.31 +2.7 403,489 - OLJFJH_02285 0.31 +3.4 403,489 - OLJFJH_02285 0.31 +3.0 403,555 + OLJFJH_02285 0.35 +2.4 403,555 + OLJFJH_02285 0.35 +2.3 403,556 - OLJFJH_02285 0.35 +4.1 403,557 + OLJFJH_02285 0.35 +3.1 403,557 + OLJFJH_02285 0.35 +2.7 403,558 - OLJFJH_02285 0.35 +4.0 403,558 - OLJFJH_02285 0.35 +3.8 403,607 + OLJFJH_02285 0.37 +1.6 403,607 + OLJFJH_02285 0.37 +1.4 403,607 + OLJFJH_02285 0.37 +1.3 403,608 - OLJFJH_02285 0.37 +1.4 403,608 - OLJFJH_02285 0.37 +2.2 403,627 - OLJFJH_02285 0.38 +2.2 403,670 - OLJFJH_02285 0.40 +2.1 403,916 - OLJFJH_02285 0.52 +2.4 403,916 - OLJFJH_02285 0.52 +2.3 403,949 + OLJFJH_02285 0.54 +1.5 403,950 - OLJFJH_02285 0.54 +1.1 403,950 - OLJFJH_02285 0.54 +1.0 404,013 + OLJFJH_02285 0.57 +1.9 404,041 - OLJFJH_02285 0.59 +1.4 404,088 + OLJFJH_02285 0.61 +1.0 404,095 + OLJFJH_02285 0.61 +1.0 404,095 + OLJFJH_02285 0.61 +1.1 404,142 + OLJFJH_02285 0.64 +0.7 404,143 - OLJFJH_02285 0.64 +2.1 404,143 - OLJFJH_02285 0.64 +2.8 404,143 - OLJFJH_02285 0.64 +2.2 404,143 - OLJFJH_02285 0.64 +4.0 404,143 - OLJFJH_02285 0.64 +2.5 404,143 - OLJFJH_02285 0.64 +2.3 404,143 - OLJFJH_02285 0.64 +2.0 404,143 - OLJFJH_02285 0.64 +2.0 404,143 - OLJFJH_02285 0.64 +2.7 404,143 - OLJFJH_02285 0.64 +2.7 404,143 - OLJFJH_02285 0.64 +2.9 404,455 + OLJFJH_02285 0.79 -0.6 404,456 - OLJFJH_02285 0.79 +2.0 404,456 - OLJFJH_02285 0.79 +3.4 404,456 - OLJFJH_02285 0.79 +2.8 404,456 - OLJFJH_02285 0.79 +2.1 404,456 - OLJFJH_02285 0.79 +3.8 404,457 + OLJFJH_02285 0.79 +1.4 404,458 - OLJFJH_02285 0.79 +2.1 404,491 - OLJFJH_02285 0.81 +2.6 404,512 - OLJFJH_02285 0.82 +2.3 404,679 + +1.0 404,679 + -0.0 404,680 - +3.4 404,680 - +3.2 404,683 + +1.5 404,683 + +0.8 404,831 + +1.4 404,832 - +2.8 404,832 - +1.5 404,832 - +2.7 404,835 - +2.0 405,028 + OLJFJH_02290 0.49 +0.8 405,028 + OLJFJH_02290 0.49 +0.4 405,028 + OLJFJH_02290 0.49 +0.2 405,029 - OLJFJH_02290 0.49 +2.0 405,029 - OLJFJH_02290 0.49 +0.6 405,237 + -0.0 405,238 - +2.2 405,293 + +0.0 405,294 - +2.0 405,444 - OLJFJH_02295 0.31 +1.7 405,528 - OLJFJH_02295 0.46 +2.7 405,552 + OLJFJH_02295 0.50 +1.9 405,552 + OLJFJH_02295 0.50 +0.9 405,553 - OLJFJH_02295 0.50 +1.6 405,553 - OLJFJH_02295 0.50 +2.6 405,644 - OLJFJH_02295 0.65 +1.0 405,783 - OLJFJH_02295 0.89 +1.1 405,783 - OLJFJH_02295 0.89 +1.8 405,811 + +0.5 405,819 - +2.4 405,869 + +2.3 405,873 + +0.3 405,873 + +0.7 405,873 + +0.9 405,873 + +0.9 405,873 + +1.6 405,874 - +1.2 405,874 - +1.4 405,874 - +0.6
Or see this region's nucleotide sequence