Strain Fitness in Erwinia amylovora T8 around OLJFJH_00665

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_00660 and OLJFJH_00665 are separated by 147 nucleotidesOLJFJH_00665 and OLJFJH_00670 are separated by 119 nucleotides OLJFJH_00660: OLJFJH_00660 - serine endoprotease DegP, at 45,243 to 46,700 _00660 OLJFJH_00665: OLJFJH_00665 - dGTPase, at 46,848 to 48,353 _00665 OLJFJH_00670: OLJFJH_00670 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 48,473 to 49,171 _00670 Position (kb) 46 47 48 49Strain fitness (log2 ratio) -1 0 1 2at 46.145 kb on + strand, within OLJFJH_00660at 46.145 kb on + strand, within OLJFJH_00660at 46.146 kb on - strand, within OLJFJH_00660at 46.228 kb on + strand, within OLJFJH_00660at 46.228 kb on + strand, within OLJFJH_00660at 46.229 kb on - strand, within OLJFJH_00660at 46.229 kb on - strand, within OLJFJH_00660at 46.684 kb on - strandat 46.888 kb on + strandat 46.912 kb on + strandat 46.939 kb on + strandat 46.940 kb on - strandat 47.131 kb on - strand, within OLJFJH_00665at 47.131 kb on - strand, within OLJFJH_00665at 47.161 kb on - strand, within OLJFJH_00665at 47.193 kb on + strand, within OLJFJH_00665at 47.356 kb on - strand, within OLJFJH_00665at 47.356 kb on - strand, within OLJFJH_00665at 47.359 kb on + strand, within OLJFJH_00665at 47.360 kb on - strand, within OLJFJH_00665at 47.363 kb on + strand, within OLJFJH_00665at 47.364 kb on - strand, within OLJFJH_00665at 47.364 kb on - strand, within OLJFJH_00665at 47.382 kb on - strand, within OLJFJH_00665at 47.383 kb on + strand, within OLJFJH_00665at 47.384 kb on - strand, within OLJFJH_00665at 47.384 kb on - strand, within OLJFJH_00665at 47.411 kb on + strand, within OLJFJH_00665at 47.576 kb on + strand, within OLJFJH_00665at 47.576 kb on + strand, within OLJFJH_00665at 47.577 kb on - strand, within OLJFJH_00665at 47.578 kb on + strand, within OLJFJH_00665at 47.578 kb on + strand, within OLJFJH_00665at 47.578 kb on + strand, within OLJFJH_00665at 47.578 kb on + strand, within OLJFJH_00665at 47.579 kb on - strand, within OLJFJH_00665at 47.579 kb on - strand, within OLJFJH_00665at 47.636 kb on + strand, within OLJFJH_00665at 47.657 kb on - strand, within OLJFJH_00665at 47.728 kb on + strand, within OLJFJH_00665at 47.729 kb on - strand, within OLJFJH_00665at 47.877 kb on + strand, within OLJFJH_00665at 47.877 kb on + strand, within OLJFJH_00665at 47.878 kb on - strand, within OLJFJH_00665at 47.878 kb on - strand, within OLJFJH_00665at 47.878 kb on - strand, within OLJFJH_00665at 47.878 kb on - strand, within OLJFJH_00665at 48.118 kb on + strand, within OLJFJH_00665at 48.119 kb on - strand, within OLJFJH_00665at 48.119 kb on - strand, within OLJFJH_00665at 48.372 kb on + strandat 48.425 kb on + strandat 48.425 kb on + strandat 48.425 kb on + strandat 48.425 kb on + strandat 48.426 kb on - strandat 49.259 kb on - strandat 49.299 kb on - strandat 49.337 kb on + strandat 49.338 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-8
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46,145 + OLJFJH_00660 0.62 +0.1
46,145 + OLJFJH_00660 0.62 +0.2
46,146 - OLJFJH_00660 0.62 -0.3
46,228 + OLJFJH_00660 0.68 -0.4
46,228 + OLJFJH_00660 0.68 -0.8
46,229 - OLJFJH_00660 0.68 -0.1
46,229 - OLJFJH_00660 0.68 -0.2
46,684 - -0.7
46,888 + +1.1
46,912 + +2.4
46,939 + +2.2
46,940 - +0.1
47,131 - OLJFJH_00665 0.19 +2.7
47,131 - OLJFJH_00665 0.19 +1.4
47,161 - OLJFJH_00665 0.21 +1.5
47,193 + OLJFJH_00665 0.23 +1.9
47,356 - OLJFJH_00665 0.34 +1.4
47,356 - OLJFJH_00665 0.34 +2.2
47,359 + OLJFJH_00665 0.34 +2.1
47,360 - OLJFJH_00665 0.34 +1.2
47,363 + OLJFJH_00665 0.34 +1.9
47,364 - OLJFJH_00665 0.34 +1.1
47,364 - OLJFJH_00665 0.34 +1.3
47,382 - OLJFJH_00665 0.35 +0.8
47,383 + OLJFJH_00665 0.36 +0.3
47,384 - OLJFJH_00665 0.36 +1.5
47,384 - OLJFJH_00665 0.36 +0.4
47,411 + OLJFJH_00665 0.37 +1.3
47,576 + OLJFJH_00665 0.48 +1.4
47,576 + OLJFJH_00665 0.48 +0.6
47,577 - OLJFJH_00665 0.48 +2.5
47,578 + OLJFJH_00665 0.48 +1.6
47,578 + OLJFJH_00665 0.48 +1.4
47,578 + OLJFJH_00665 0.48 +2.2
47,578 + OLJFJH_00665 0.48 +2.2
47,579 - OLJFJH_00665 0.49 -0.2
47,579 - OLJFJH_00665 0.49 +2.1
47,636 + OLJFJH_00665 0.52 +0.2
47,657 - OLJFJH_00665 0.54 +1.7
47,728 + OLJFJH_00665 0.58 +0.5
47,729 - OLJFJH_00665 0.58 +0.4
47,877 + OLJFJH_00665 0.68 +1.8
47,877 + OLJFJH_00665 0.68 +1.3
47,878 - OLJFJH_00665 0.68 +1.1
47,878 - OLJFJH_00665 0.68 +1.6
47,878 - OLJFJH_00665 0.68 +0.8
47,878 - OLJFJH_00665 0.68 +1.9
48,118 + OLJFJH_00665 0.84 +1.2
48,119 - OLJFJH_00665 0.84 +2.1
48,119 - OLJFJH_00665 0.84 +2.6
48,372 + +1.7
48,425 + -0.2
48,425 + +0.3
48,425 + +0.0
48,425 + +1.2
48,426 - +0.5
49,259 - -1.4
49,299 - +0.5
49,337 + -0.9
49,338 - -0.1

Or see this region's nucleotide sequence