Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24810

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
4,725,421	-				+0.3
4,725,562	+				-0.5
4,725,563	-				-0.2
4,725,586	-				-0.5
4,725,602	+				+0.7
4,725,628	+				-1.6
4,725,665	+				-0.7
4,725,742	-				-0.5
4,725,893	+				-1.2
4,725,897	-				+0.4
4,726,140	+				-0.3
4,726,144	+				+1.1
4,726,151	-				-0.4
4,726,266	-				-1.7
4,726,310	-	rsmG	LU632_RS24810	0.10	+1.3
4,726,383	+	rsmG	LU632_RS24810	0.22	-0.1
4,726,383	+	rsmG	LU632_RS24810	0.22	+0.7
4,726,389	-	rsmG	LU632_RS24810	0.23	-1.2
4,726,389	-	rsmG	LU632_RS24810	0.23	-1.2
4,726,435	+	rsmG	LU632_RS24810	0.30	-1.5
4,726,435	+	rsmG	LU632_RS24810	0.30	+2.3
4,726,435	+	rsmG	LU632_RS24810	0.30	-1.8
4,726,436	-	rsmG	LU632_RS24810	0.30	-1.6
4,726,436	-	rsmG	LU632_RS24810	0.30	-0.3
4,726,436	-	rsmG	LU632_RS24810	0.30	-0.5
4,726,436	-	rsmG	LU632_RS24810	0.30	+0.1
4,726,436	-	rsmG	LU632_RS24810	0.30	+1.3
4,726,436	-	rsmG	LU632_RS24810	0.30	+1.3
4,726,533	-	rsmG	LU632_RS24810	0.46	+2.3
4,726,533	-	rsmG	LU632_RS24810	0.46	-0.2
4,726,545	-	rsmG	LU632_RS24810	0.48	-0.5
4,726,545	-	rsmG	LU632_RS24810	0.48	-0.4
4,726,545	-	rsmG	LU632_RS24810	0.48	+2.3
4,726,708	+	rsmG	LU632_RS24810	0.74	-1.9
4,726,756	-	rsmG	LU632_RS24810	0.82	+0.7
4,726,771	+	rsmG	LU632_RS24810	0.84	+0.9
4,726,771	+	rsmG	LU632_RS24810	0.84	-0.1
4,726,772	-	rsmG	LU632_RS24810	0.85	-0.9
4,726,772	-	rsmG	LU632_RS24810	0.85	-1.3
4,726,772	-	rsmG	LU632_RS24810	0.85	+0.0
4,726,772	-	rsmG	LU632_RS24810	0.85	-0.1
4,726,775	+	rsmG	LU632_RS24810	0.85	-0.1
4,726,776	-	rsmG	LU632_RS24810	0.85	+1.3
4,726,784	+	rsmG	LU632_RS24810	0.86	-2.4
4,726,784	+	rsmG	LU632_RS24810	0.86	-1.3
4,726,785	-	rsmG	LU632_RS24810	0.87	-2.3
4,726,887	-				+0.0
4,726,920	+				-1.3
4,726,920	+				+0.5
4,726,920	+				-1.5
4,726,920	+				-1.8
4,726,921	-				+0.5
4,726,921	-				-1.5