Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24705

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
4,705,196	+	ovoA	LU632_RS24695	0.88	+0.1
4,705,200	-	ovoA	LU632_RS24695	0.88	+1.0
4,705,200	-	ovoA	LU632_RS24695	0.88	-0.8
4,705,245	+	ovoA	LU632_RS24695	0.90	-0.2
4,705,245	+	ovoA	LU632_RS24695	0.90	+1.9
4,705,246	-	ovoA	LU632_RS24695	0.90	-0.7
4,705,248	-				+1.5
4,705,248	-				-0.8
4,705,248	-				-0.1
4,705,566	+				-0.1
4,705,566	+				-1.6
4,705,583	-				-0.2
4,705,622	+				-0.5
4,705,623	-				-2.0
4,705,654	-	asnC	LU632_RS24700	0.16	-0.0
4,705,802	+	asnC	LU632_RS24700	0.48	-1.1
4,705,878	+	asnC	LU632_RS24700	0.65	+0.8
4,705,878	+	asnC	LU632_RS24700	0.65	-0.5
4,705,879	-	asnC	LU632_RS24700	0.65	+0.4
4,706,031	-				+0.4
4,706,031	-				-0.3
4,706,080	+				-0.6
4,706,132	+				+1.3
4,706,132	+				+0.1
4,706,176	-				-0.5
4,706,231	-				-0.5
4,706,313	+		LU632_RS24705	0.15	-0.4
4,706,346	+		LU632_RS24705	0.17	+0.1
4,706,347	-		LU632_RS24705	0.17	+0.9
4,706,347	-		LU632_RS24705	0.17	-0.3
4,706,704	+		LU632_RS24705	0.45	+0.5
4,706,704	+		LU632_RS24705	0.45	-0.9
4,706,705	-		LU632_RS24705	0.45	+0.7
4,706,705	-		LU632_RS24705	0.45	-1.2
4,706,705	-		LU632_RS24705	0.45	+0.7
4,706,705	-		LU632_RS24705	0.45	+0.7
4,706,705	-		LU632_RS24705	0.45	-1.8
4,706,735	-		LU632_RS24705	0.48	-0.5
4,706,737	-		LU632_RS24705	0.48	+1.0
4,706,799	+		LU632_RS24705	0.53	-0.4
4,706,800	-		LU632_RS24705	0.53	+0.1
4,706,863	-		LU632_RS24705	0.58	-1.1
4,706,867	+		LU632_RS24705	0.58	+0.7
4,706,904	+		LU632_RS24705	0.61	-1.3
4,706,904	+		LU632_RS24705	0.61	+0.1
4,706,905	-		LU632_RS24705	0.61	-1.9
4,706,918	+		LU632_RS24705	0.62	+2.3
4,706,919	-		LU632_RS24705	0.62	-1.7
4,706,943	+		LU632_RS24705	0.64	-0.9
4,707,014	+		LU632_RS24705	0.70	-0.3
4,707,051	+		LU632_RS24705	0.73	-2.5
4,707,052	-		LU632_RS24705	0.73	+0.1
4,707,072	+		LU632_RS24705	0.74	+0.3
4,707,073	-		LU632_RS24705	0.74	-0.7
4,707,085	+		LU632_RS24705	0.75	-1.1
4,707,086	-		LU632_RS24705	0.75	+2.1
4,707,185	-		LU632_RS24705	0.83	+0.9
4,707,190	-		LU632_RS24705	0.84	+1.0
4,707,267	+		LU632_RS24705	0.90	+0.8
4,707,277	-				-1.1
4,707,470	+				-0.1
4,707,651	+		LU632_RS24710	0.11	-1.7
4,707,651	+		LU632_RS24710	0.11	-1.4
4,707,688	+		LU632_RS24710	0.12	-0.3
4,707,694	-		LU632_RS24710	0.12	+0.6
4,707,805	+		LU632_RS24710	0.17	+1.7
4,707,806	+		LU632_RS24710	0.17	-0.7
4,707,807	-		LU632_RS24710	0.17	+1.1
4,707,957	+		LU632_RS24710	0.23	+1.5
4,707,963	+		LU632_RS24710	0.24	+0.9
4,707,963	+		LU632_RS24710	0.24	-0.7
4,708,007	+		LU632_RS24710	0.26	+1.1
4,708,008	-		LU632_RS24710	0.26	-0.1
4,708,018	-		LU632_RS24710	0.26	-0.0
4,708,021	+		LU632_RS24710	0.26	-0.3
4,708,022	-		LU632_RS24710	0.26	+0.3
4,708,037	+		LU632_RS24710	0.27	+0.3
4,708,038	-		LU632_RS24710	0.27	+0.4
4,708,040	-		LU632_RS24710	0.27	+0.5
4,708,040	-		LU632_RS24710	0.27	+2.3
4,708,091	-		LU632_RS24710	0.29	+0.1
4,708,147	+		LU632_RS24710	0.31	+0.7
4,708,147	+		LU632_RS24710	0.31	+1.0
4,708,199	+		LU632_RS24710	0.34	-0.4
4,708,385	+		LU632_RS24710	0.41	+0.4
4,708,385	+		LU632_RS24710	0.41	+0.6
4,708,387	+		LU632_RS24710	0.41	+0.3
4,708,387	+		LU632_RS24710	0.41	-1.0
4,708,387	+		LU632_RS24710	0.41	-1.7
4,708,387	+		LU632_RS24710	0.41	+0.3
4,708,387	+		LU632_RS24710	0.41	-0.1
4,708,388	-		LU632_RS24710	0.41	+0.4
4,708,388	-		LU632_RS24710	0.41	-0.2