Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24340 and LU632_RS24345 are separated by 2 nucleotides LU632_RS24345 and LU632_RS24350 are separated by 534 nucleotides LU632_RS24350 and LU632_RS24355 are separated by 100 nucleotides LU632_RS24355 and LU632_RS24360 overlap by 1 nucleotides LU632_RS24360 and LU632_RS24365 are separated by 196 nucleotides
LU632_RS24340: LU632_RS24340 - pesticin C-terminus-like muramidase, at 4,643,765 to 4,644,367
_RS24340
LU632_RS24345: LU632_RS24345 - hypothetical protein, at 4,644,370 to 4,644,783
_RS24345
LU632_RS24350: LU632_RS24350 - IS6 family transposase, at 4,645,318 to 4,646,022
_RS24350
LU632_RS24355: LU632_RS24355 - type II toxin-antitoxin system PemK/MazF family toxin, at 4,646,123 to 4,646,488
_RS24355
LU632_RS24360: LU632_RS24360 - hypothetical protein, at 4,646,488 to 4,646,760
_RS24360
LU632_RS24365: LU632_RS24365 - IS6 family transposase, at 4,646,957 to 4,647,514
_RS24365
Position (kb) 4645
4646
4647 Strain fitness (log2 ratio) -1
0
1
2
3 at 4644.702 kb on + strand, within LU632_RS24345 at 4644.797 kb on - strand at 4644.801 kb on + strand at 4644.865 kb on + strand at 4644.925 kb on + strand at 4645.016 kb on + strand at 4645.017 kb on - strand at 4645.017 kb on - strand at 4645.089 kb on + strand at 4645.099 kb on + strand at 4645.099 kb on + strand at 4645.105 kb on + strand at 4645.234 kb on + strand at 4645.249 kb on + strand at 4645.249 kb on + strand at 4645.283 kb on - strand at 4646.158 kb on + strand at 4646.173 kb on + strand, within LU632_RS24355 at 4646.174 kb on - strand, within LU632_RS24355 at 4646.174 kb on - strand, within LU632_RS24355 at 4646.293 kb on - strand, within LU632_RS24355 at 4646.397 kb on + strand, within LU632_RS24355 at 4646.397 kb on + strand, within LU632_RS24355 at 4646.398 kb on - strand, within LU632_RS24355 at 4646.398 kb on - strand, within LU632_RS24355 at 4646.398 kb on - strand, within LU632_RS24355 at 4646.398 kb on - strand, within LU632_RS24355 at 4646.400 kb on + strand, within LU632_RS24355 at 4646.401 kb on - strand, within LU632_RS24355 at 4646.493 kb on + strand at 4646.494 kb on - strand at 4646.798 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 4,644,702 + LU632_RS24345 0.80 +0.1 4,644,797 - -0.3 4,644,801 + -0.7 4,644,865 + -0.7 4,644,925 + +1.7 4,645,016 + +0.3 4,645,017 - -0.8 4,645,017 - -0.9 4,645,089 + +0.9 4,645,099 + +0.4 4,645,099 + -1.3 4,645,105 + +0.1 4,645,234 + -0.8 4,645,249 + -0.6 4,645,249 + +0.1 4,645,283 - +0.3 4,646,158 + -0.1 4,646,173 + LU632_RS24355 0.14 +1.7 4,646,174 - LU632_RS24355 0.14 -0.6 4,646,174 - LU632_RS24355 0.14 -0.1 4,646,293 - LU632_RS24355 0.46 -0.1 4,646,397 + LU632_RS24355 0.75 -0.1 4,646,397 + LU632_RS24355 0.75 -1.3 4,646,398 - LU632_RS24355 0.75 -0.1 4,646,398 - LU632_RS24355 0.75 +1.4 4,646,398 - LU632_RS24355 0.75 +1.3 4,646,398 - LU632_RS24355 0.75 -0.2 4,646,400 + LU632_RS24355 0.76 -0.1 4,646,401 - LU632_RS24355 0.76 -1.0 4,646,493 + +0.5 4,646,494 - -1.4 4,646,798 - +2.8
Or see this region's nucleotide sequence