Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt wzxE and rffA are separated by 1 nucleotides rffA and rffC are separated by 4 nucleotides rffC and wecC overlap by 4 nucleotides
LU632_RS24220: wzxE - lipid III flippase WzxE, at 4,618,860 to 4,620,110
wzxE
LU632_RS24225: rffA - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 4,620,112 to 4,621,242
rffA
LU632_RS24230: rffC - dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase, at 4,621,247 to 4,621,957
rffC
LU632_RS24235: wecC - UDP-N-acetyl-D-mannosamine dehydrogenase, at 4,621,954 to 4,623,216
wecC
Position (kb) 4620
4621
4622 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4619.307 kb on - strand, within wzxE at 4619.309 kb on + strand, within wzxE at 4619.310 kb on - strand, within wzxE at 4619.334 kb on - strand, within wzxE at 4619.433 kb on - strand, within wzxE at 4619.534 kb on + strand, within wzxE at 4619.695 kb on - strand, within wzxE at 4619.695 kb on - strand, within wzxE at 4619.750 kb on + strand, within wzxE at 4619.750 kb on + strand, within wzxE at 4619.792 kb on + strand, within wzxE at 4619.853 kb on + strand, within wzxE at 4619.853 kb on + strand, within wzxE at 4619.883 kb on + strand, within wzxE at 4619.918 kb on - strand, within wzxE at 4619.918 kb on - strand, within wzxE at 4619.974 kb on - strand, within wzxE at 4620.174 kb on - strand at 4620.281 kb on + strand, within rffA at 4620.281 kb on + strand, within rffA at 4620.281 kb on + strand, within rffA at 4620.281 kb on + strand, within rffA at 4620.282 kb on - strand, within rffA at 4620.282 kb on - strand, within rffA at 4620.282 kb on - strand, within rffA at 4620.322 kb on - strand, within rffA at 4620.369 kb on + strand, within rffA at 4620.369 kb on + strand, within rffA at 4620.370 kb on - strand, within rffA at 4620.370 kb on - strand, within rffA at 4620.370 kb on - strand, within rffA at 4620.370 kb on - strand, within rffA at 4620.412 kb on + strand, within rffA at 4620.452 kb on + strand, within rffA at 4620.452 kb on + strand, within rffA at 4620.453 kb on - strand, within rffA at 4620.518 kb on + strand, within rffA at 4620.518 kb on + strand, within rffA at 4620.545 kb on + strand, within rffA at 4620.546 kb on - strand, within rffA at 4620.572 kb on + strand, within rffA at 4620.572 kb on + strand, within rffA at 4620.572 kb on + strand, within rffA at 4620.573 kb on - strand, within rffA at 4620.573 kb on - strand, within rffA at 4620.576 kb on + strand, within rffA at 4620.577 kb on - strand, within rffA at 4620.577 kb on - strand, within rffA at 4620.693 kb on + strand, within rffA at 4620.693 kb on + strand, within rffA at 4620.696 kb on - strand, within rffA at 4620.761 kb on + strand, within rffA at 4620.809 kb on + strand, within rffA at 4620.810 kb on - strand, within rffA at 4620.810 kb on - strand, within rffA at 4620.902 kb on - strand, within rffA at 4620.976 kb on + strand, within rffA at 4620.976 kb on + strand, within rffA at 4621.005 kb on + strand, within rffA at 4621.005 kb on + strand, within rffA at 4621.007 kb on + strand, within rffA at 4621.008 kb on - strand, within rffA at 4621.102 kb on - strand, within rffA at 4621.194 kb on + strand at 4621.194 kb on + strand at 4621.194 kb on + strand at 4621.194 kb on + strand at 4621.195 kb on - strand at 4621.196 kb on + strand at 4621.197 kb on - strand at 4621.197 kb on - strand at 4621.197 kb on - strand at 4621.197 kb on - strand at 4621.230 kb on + strand at 4621.231 kb on - strand at 4621.242 kb on + strand at 4621.242 kb on + strand at 4621.242 kb on + strand at 4621.248 kb on + strand at 4621.254 kb on + strand at 4621.254 kb on + strand at 4621.254 kb on + strand at 4621.299 kb on + strand at 4621.388 kb on + strand, within rffC at 4621.388 kb on + strand, within rffC at 4621.389 kb on - strand, within rffC at 4621.389 kb on - strand, within rffC at 4621.389 kb on - strand, within rffC at 4621.393 kb on + strand, within rffC at 4621.393 kb on + strand, within rffC at 4621.393 kb on + strand, within rffC at 4621.393 kb on + strand, within rffC at 4621.393 kb on + strand, within rffC at 4621.394 kb on - strand, within rffC at 4621.600 kb on - strand, within rffC at 4621.812 kb on - strand, within rffC at 4621.934 kb on + strand at 4621.996 kb on - strand at 4622.148 kb on + strand, within wecC
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 4,619,307 - wzxE LU632_RS24220 0.36 -0.6 4,619,309 + wzxE LU632_RS24220 0.36 -2.9 4,619,310 - wzxE LU632_RS24220 0.36 +2.1 4,619,334 - wzxE LU632_RS24220 0.38 -1.2 4,619,433 - wzxE LU632_RS24220 0.46 -0.0 4,619,534 + wzxE LU632_RS24220 0.54 -1.0 4,619,695 - wzxE LU632_RS24220 0.67 -1.7 4,619,695 - wzxE LU632_RS24220 0.67 -1.1 4,619,750 + wzxE LU632_RS24220 0.71 -1.3 4,619,750 + wzxE LU632_RS24220 0.71 -1.2 4,619,792 + wzxE LU632_RS24220 0.75 +1.3 4,619,853 + wzxE LU632_RS24220 0.79 -1.1 4,619,853 + wzxE LU632_RS24220 0.79 -0.6 4,619,883 + wzxE LU632_RS24220 0.82 -0.7 4,619,918 - wzxE LU632_RS24220 0.85 -0.4 4,619,918 - wzxE LU632_RS24220 0.85 -0.6 4,619,974 - wzxE LU632_RS24220 0.89 -0.5 4,620,174 - +0.1 4,620,281 + rffA LU632_RS24225 0.15 +1.1 4,620,281 + rffA LU632_RS24225 0.15 +1.0 4,620,281 + rffA LU632_RS24225 0.15 -1.9 4,620,281 + rffA LU632_RS24225 0.15 -2.2 4,620,282 - rffA LU632_RS24225 0.15 +1.1 4,620,282 - rffA LU632_RS24225 0.15 -0.4 4,620,282 - rffA LU632_RS24225 0.15 -1.5 4,620,322 - rffA LU632_RS24225 0.19 -0.9 4,620,369 + rffA LU632_RS24225 0.23 +2.3 4,620,369 + rffA LU632_RS24225 0.23 -1.4 4,620,370 - rffA LU632_RS24225 0.23 -1.9 4,620,370 - rffA LU632_RS24225 0.23 -1.4 4,620,370 - rffA LU632_RS24225 0.23 -0.0 4,620,370 - rffA LU632_RS24225 0.23 -0.9 4,620,412 + rffA LU632_RS24225 0.27 -0.7 4,620,452 + rffA LU632_RS24225 0.30 -1.6 4,620,452 + rffA LU632_RS24225 0.30 -0.7 4,620,453 - rffA LU632_RS24225 0.30 -0.9 4,620,518 + rffA LU632_RS24225 0.36 -0.3 4,620,518 + rffA LU632_RS24225 0.36 -0.5 4,620,545 + rffA LU632_RS24225 0.38 -2.9 4,620,546 - rffA LU632_RS24225 0.38 -0.7 4,620,572 + rffA LU632_RS24225 0.41 -0.3 4,620,572 + rffA LU632_RS24225 0.41 -0.0 4,620,572 + rffA LU632_RS24225 0.41 -0.0 4,620,573 - rffA LU632_RS24225 0.41 -0.5 4,620,573 - rffA LU632_RS24225 0.41 -2.9 4,620,576 + rffA LU632_RS24225 0.41 -1.4 4,620,577 - rffA LU632_RS24225 0.41 -0.0 4,620,577 - rffA LU632_RS24225 0.41 -3.2 4,620,693 + rffA LU632_RS24225 0.51 -0.3 4,620,693 + rffA LU632_RS24225 0.51 -0.9 4,620,696 - rffA LU632_RS24225 0.52 -1.7 4,620,761 + rffA LU632_RS24225 0.57 -0.7 4,620,809 + rffA LU632_RS24225 0.62 +0.4 4,620,810 - rffA LU632_RS24225 0.62 -1.4 4,620,810 - rffA LU632_RS24225 0.62 -0.7 4,620,902 - rffA LU632_RS24225 0.70 -1.2 4,620,976 + rffA LU632_RS24225 0.76 -1.3 4,620,976 + rffA LU632_RS24225 0.76 +0.3 4,621,005 + rffA LU632_RS24225 0.79 -0.9 4,621,005 + rffA LU632_RS24225 0.79 -2.1 4,621,007 + rffA LU632_RS24225 0.79 -2.3 4,621,008 - rffA LU632_RS24225 0.79 -1.7 4,621,102 - rffA LU632_RS24225 0.88 +0.8 4,621,194 + -0.5 4,621,194 + -2.9 4,621,194 + +0.1 4,621,194 + -1.8 4,621,195 - +0.7 4,621,196 + -0.7 4,621,197 - -4.0 4,621,197 - +0.7 4,621,197 - +2.3 4,621,197 - -1.8 4,621,230 + +2.1 4,621,231 - -2.9 4,621,242 + -0.9 4,621,242 + -2.3 4,621,242 + -2.3 4,621,248 + -2.0 4,621,254 + +1.4 4,621,254 + +2.3 4,621,254 + -2.7 4,621,299 + +1.3 4,621,388 + rffC LU632_RS24230 0.20 -0.9 4,621,388 + rffC LU632_RS24230 0.20 -1.9 4,621,389 - rffC LU632_RS24230 0.20 -0.2 4,621,389 - rffC LU632_RS24230 0.20 -0.0 4,621,389 - rffC LU632_RS24230 0.20 -1.6 4,621,393 + rffC LU632_RS24230 0.21 -2.0 4,621,393 + rffC LU632_RS24230 0.21 +0.3 4,621,393 + rffC LU632_RS24230 0.21 -0.0 4,621,393 + rffC LU632_RS24230 0.21 +1.3 4,621,393 + rffC LU632_RS24230 0.21 +1.3 4,621,394 - rffC LU632_RS24230 0.21 -1.0 4,621,600 - rffC LU632_RS24230 0.50 +0.6 4,621,812 - rffC LU632_RS24230 0.79 -2.8 4,621,934 + -0.5 4,621,996 - +0.7 4,622,148 + wecC LU632_RS24235 0.15 +1.7
Or see this region's nucleotide sequence