Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23325 and LU632_RS23330 overlap by 7 nucleotides LU632_RS23330 and LU632_RS23335 are separated by 9 nucleotides LU632_RS23335 and LU632_RS23340 overlap by 8 nucleotides LU632_RS23340 and sbmA are separated by 58 nucleotides
LU632_RS23325: LU632_RS23325 - hypothetical protein, at 4,444,881 to 4,445,069
_RS23325
LU632_RS23330: LU632_RS23330 - dihydroxyacetone kinase subunit DhaK, at 4,445,063 to 4,445,956
_RS23330
LU632_RS23335: LU632_RS23335 - hypothetical protein, at 4,445,966 to 4,446,136
_RS23335
LU632_RS23340: LU632_RS23340 - dihydroxyacetone kinase subunit L, at 4,446,129 to 4,446,281
_RS23340
LU632_RS23345: sbmA - peptide antibiotic transporter SbmA, at 4,446,340 to 4,447,539
sbmA
Position (kb) 4445
4446
4447 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4444.988 kb on + strand, within LU632_RS23325 at 4445.135 kb on - strand at 4445.353 kb on - strand, within LU632_RS23330 at 4445.658 kb on + strand, within LU632_RS23330 at 4445.658 kb on + strand, within LU632_RS23330 at 4445.685 kb on + strand, within LU632_RS23330 at 4445.685 kb on + strand, within LU632_RS23330 at 4445.752 kb on - strand, within LU632_RS23330 at 4445.955 kb on - strand at 4445.955 kb on - strand at 4446.027 kb on + strand, within LU632_RS23335 at 4446.115 kb on + strand, within LU632_RS23335 at 4446.116 kb on - strand, within LU632_RS23335 at 4446.128 kb on + strand at 4446.128 kb on + strand at 4446.203 kb on + strand, within LU632_RS23340 at 4446.279 kb on + strand at 4446.280 kb on - strand at 4446.377 kb on - strand at 4446.384 kb on + strand at 4446.386 kb on + strand at 4446.431 kb on + strand at 4446.465 kb on + strand, within sbmA at 4446.507 kb on + strand, within sbmA at 4446.581 kb on + strand, within sbmA at 4446.581 kb on + strand, within sbmA at 4446.581 kb on + strand, within sbmA at 4446.581 kb on + strand, within sbmA at 4446.582 kb on - strand, within sbmA at 4446.582 kb on - strand, within sbmA at 4446.903 kb on + strand, within sbmA at 4446.907 kb on - strand, within sbmA at 4446.907 kb on - strand, within sbmA at 4446.992 kb on - strand, within sbmA at 4447.011 kb on + strand, within sbmA at 4447.011 kb on + strand, within sbmA at 4447.012 kb on - strand, within sbmA at 4447.013 kb on + strand, within sbmA at 4447.013 kb on + strand, within sbmA at 4447.013 kb on + strand, within sbmA at 4447.013 kb on + strand, within sbmA at 4447.013 kb on + strand, within sbmA at 4447.013 kb on + strand, within sbmA at 4447.014 kb on - strand, within sbmA at 4447.014 kb on - strand, within sbmA at 4447.014 kb on - strand, within sbmA at 4447.014 kb on - strand, within sbmA at 4447.014 kb on - strand, within sbmA at 4447.068 kb on + strand, within sbmA at 4447.068 kb on + strand, within sbmA at 4447.076 kb on - strand, within sbmA at 4447.104 kb on + strand, within sbmA at 4447.105 kb on - strand, within sbmA
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 4,444,988 + LU632_RS23325 0.57 +0.7 4,445,135 - +1.9 4,445,353 - LU632_RS23330 0.32 +1.1 4,445,658 + LU632_RS23330 0.67 +0.1 4,445,658 + LU632_RS23330 0.67 -0.0 4,445,685 + LU632_RS23330 0.70 -1.9 4,445,685 + LU632_RS23330 0.70 -0.6 4,445,752 - LU632_RS23330 0.77 +0.5 4,445,955 - +0.8 4,445,955 - +0.5 4,446,027 + LU632_RS23335 0.36 -0.5 4,446,115 + LU632_RS23335 0.87 -0.5 4,446,116 - LU632_RS23335 0.88 -0.2 4,446,128 + -0.3 4,446,128 + -0.7 4,446,203 + LU632_RS23340 0.48 +0.4 4,446,279 + +0.3 4,446,280 - +1.1 4,446,377 - -1.4 4,446,384 + -0.4 4,446,386 + -0.8 4,446,431 + -1.2 4,446,465 + sbmA LU632_RS23345 0.10 +0.4 4,446,507 + sbmA LU632_RS23345 0.14 -2.1 4,446,581 + sbmA LU632_RS23345 0.20 +0.3 4,446,581 + sbmA LU632_RS23345 0.20 -0.7 4,446,581 + sbmA LU632_RS23345 0.20 -0.8 4,446,581 + sbmA LU632_RS23345 0.20 -0.9 4,446,582 - sbmA LU632_RS23345 0.20 +0.3 4,446,582 - sbmA LU632_RS23345 0.20 +0.4 4,446,903 + sbmA LU632_RS23345 0.47 -1.1 4,446,907 - sbmA LU632_RS23345 0.47 -0.1 4,446,907 - sbmA LU632_RS23345 0.47 +0.7 4,446,992 - sbmA LU632_RS23345 0.54 -0.6 4,447,011 + sbmA LU632_RS23345 0.56 -0.3 4,447,011 + sbmA LU632_RS23345 0.56 -0.7 4,447,012 - sbmA LU632_RS23345 0.56 -0.3 4,447,013 + sbmA LU632_RS23345 0.56 -0.9 4,447,013 + sbmA LU632_RS23345 0.56 -0.4 4,447,013 + sbmA LU632_RS23345 0.56 -0.8 4,447,013 + sbmA LU632_RS23345 0.56 +0.6 4,447,013 + sbmA LU632_RS23345 0.56 -0.5 4,447,013 + sbmA LU632_RS23345 0.56 -0.6 4,447,014 - sbmA LU632_RS23345 0.56 -0.3 4,447,014 - sbmA LU632_RS23345 0.56 -0.8 4,447,014 - sbmA LU632_RS23345 0.56 +0.2 4,447,014 - sbmA LU632_RS23345 0.56 +0.0 4,447,014 - sbmA LU632_RS23345 0.56 -0.7 4,447,068 + sbmA LU632_RS23345 0.61 -0.3 4,447,068 + sbmA LU632_RS23345 0.61 -0.8 4,447,076 - sbmA LU632_RS23345 0.61 +3.1 4,447,104 + sbmA LU632_RS23345 0.64 +0.7 4,447,105 - sbmA LU632_RS23345 0.64 +0.1
Or see this region's nucleotide sequence