Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23190 and LU632_RS23195 are separated by 155 nucleotides LU632_RS23195 and LU632_RS23200 are separated by 95 nucleotides LU632_RS23200 and LU632_RS23205 overlap by 8 nucleotides LU632_RS23205 and LU632_RS23210 are separated by 132 nucleotides LU632_RS23210 and LU632_RS23215 are separated by 199 nucleotides LU632_RS23215 and LU632_RS23220 overlap by 22 nucleotides
LU632_RS23190: LU632_RS23190 - IS6 family transposase, at 4,419,471 to 4,420,118
_RS23190
LU632_RS23195: LU632_RS23195 - amidohydrolase, at 4,420,274 to 4,420,471
_RS23195
LU632_RS23200: LU632_RS23200 - hypothetical protein, at 4,420,567 to 4,421,055
_RS23200
LU632_RS23205: LU632_RS23205 - alpha/beta hydrolase, at 4,421,048 to 4,421,200
_RS23205
LU632_RS23210: LU632_RS23210 - YbjP/YqhG family protein, at 4,421,333 to 4,421,779
_RS23210
LU632_RS23215: LU632_RS23215 - VirK/YbjX family protein, at 4,421,979 to 4,422,071
_RS23215
LU632_RS23220: LU632_RS23220 - VirK/YbjX family protein, at 4,422,050 to 4,422,331
_RS23220
Position (kb) 4421
4422 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4420.057 kb on - strand at 4420.128 kb on - strand at 4420.258 kb on - strand at 4420.273 kb on + strand at 4420.416 kb on + strand, within LU632_RS23195 at 4420.488 kb on - strand at 4420.531 kb on + strand at 4420.629 kb on + strand, within LU632_RS23200 at 4420.630 kb on - strand, within LU632_RS23200 at 4420.660 kb on + strand, within LU632_RS23200 at 4420.820 kb on + strand, within LU632_RS23200 at 4420.951 kb on + strand, within LU632_RS23200 at 4420.951 kb on + strand, within LU632_RS23200 at 4421.027 kb on - strand at 4421.073 kb on + strand, within LU632_RS23205 at 4421.073 kb on + strand, within LU632_RS23205 at 4421.074 kb on - strand, within LU632_RS23205 at 4421.079 kb on - strand, within LU632_RS23205 at 4421.079 kb on - strand, within LU632_RS23205 at 4421.079 kb on - strand, within LU632_RS23205 at 4421.128 kb on + strand, within LU632_RS23205 at 4421.128 kb on + strand, within LU632_RS23205 at 4421.272 kb on + strand at 4421.272 kb on + strand at 4421.272 kb on + strand at 4421.279 kb on + strand at 4421.329 kb on - strand at 4421.331 kb on + strand at 4421.361 kb on + strand at 4421.401 kb on + strand, within LU632_RS23210 at 4421.433 kb on - strand, within LU632_RS23210 at 4421.441 kb on + strand, within LU632_RS23210 at 4421.504 kb on + strand, within LU632_RS23210 at 4421.534 kb on + strand, within LU632_RS23210 at 4421.535 kb on - strand, within LU632_RS23210 at 4421.663 kb on + strand, within LU632_RS23210 at 4421.674 kb on - strand, within LU632_RS23210 at 4421.700 kb on + strand, within LU632_RS23210 at 4421.700 kb on + strand, within LU632_RS23210 at 4421.701 kb on - strand, within LU632_RS23210 at 4421.733 kb on + strand, within LU632_RS23210 at 4421.742 kb on + strand at 4421.806 kb on + strand at 4421.807 kb on - strand at 4421.807 kb on - strand at 4421.809 kb on - strand at 4421.874 kb on + strand at 4421.900 kb on + strand at 4421.900 kb on + strand at 4421.900 kb on + strand at 4421.901 kb on - strand at 4421.951 kb on + strand at 4421.951 kb on + strand at 4421.951 kb on + strand at 4422.034 kb on - strand, within LU632_RS23215
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 4,420,057 - -1.3 4,420,128 - +0.9 4,420,258 - +0.4 4,420,273 + -0.2 4,420,416 + LU632_RS23195 0.72 -1.3 4,420,488 - -0.9 4,420,531 + -1.3 4,420,629 + LU632_RS23200 0.13 -0.6 4,420,630 - LU632_RS23200 0.13 -0.1 4,420,660 + LU632_RS23200 0.19 -1.3 4,420,820 + LU632_RS23200 0.52 +0.7 4,420,951 + LU632_RS23200 0.79 -0.6 4,420,951 + LU632_RS23200 0.79 +0.2 4,421,027 - -0.9 4,421,073 + LU632_RS23205 0.16 +1.3 4,421,073 + LU632_RS23205 0.16 -0.3 4,421,074 - LU632_RS23205 0.17 -2.0 4,421,079 - LU632_RS23205 0.20 -0.2 4,421,079 - LU632_RS23205 0.20 -0.5 4,421,079 - LU632_RS23205 0.20 -0.6 4,421,128 + LU632_RS23205 0.52 +0.8 4,421,128 + LU632_RS23205 0.52 -0.4 4,421,272 + -0.6 4,421,272 + +0.3 4,421,272 + -0.7 4,421,279 + +0.9 4,421,329 - -0.1 4,421,331 + -0.0 4,421,361 + -1.2 4,421,401 + LU632_RS23210 0.15 -1.0 4,421,433 - LU632_RS23210 0.22 -0.6 4,421,441 + LU632_RS23210 0.24 +3.0 4,421,504 + LU632_RS23210 0.38 +0.1 4,421,534 + LU632_RS23210 0.45 -1.1 4,421,535 - LU632_RS23210 0.45 +0.2 4,421,663 + LU632_RS23210 0.74 +1.7 4,421,674 - LU632_RS23210 0.76 -0.3 4,421,700 + LU632_RS23210 0.82 +0.7 4,421,700 + LU632_RS23210 0.82 +1.0 4,421,701 - LU632_RS23210 0.82 +0.4 4,421,733 + LU632_RS23210 0.89 +1.7 4,421,742 + +1.6 4,421,806 + -0.7 4,421,807 - +0.2 4,421,807 - -0.2 4,421,809 - +0.2 4,421,874 + -2.2 4,421,900 + -1.3 4,421,900 + +0.1 4,421,900 + +1.6 4,421,901 - -1.7 4,421,951 + -1.0 4,421,951 + -0.3 4,421,951 + +1.0 4,422,034 - LU632_RS23215 0.59 -0.6
Or see this region's nucleotide sequence