Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23170 and LU632_RS23175 are separated by 702 nucleotides LU632_RS23175 and LU632_RS23180 are separated by 87 nucleotides LU632_RS23180 and LU632_RS23185 are separated by 276 nucleotides
LU632_RS23170: LU632_RS23170 - DUF4225 domain-containing protein, at 4,415,764 to 4,416,573
_RS23170
LU632_RS23175: LU632_RS23175 - hypothetical protein, at 4,417,276 to 4,417,542
_RS23175
LU632_RS23180: LU632_RS23180 - AAA family ATPase, at 4,417,630 to 4,417,722
_RS23180
LU632_RS23185: LU632_RS23185 - IS481 family transposase, at 4,417,999 to 4,419,039
_RS23185
Position (kb) 4417
4418 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4416.348 kb on + strand, within LU632_RS23170 at 4416.410 kb on - strand, within LU632_RS23170 at 4416.468 kb on + strand, within LU632_RS23170 at 4416.478 kb on - strand, within LU632_RS23170 at 4416.528 kb on + strand at 4416.528 kb on + strand at 4416.552 kb on + strand at 4416.574 kb on - strand at 4416.617 kb on + strand at 4416.646 kb on + strand at 4416.646 kb on + strand at 4416.652 kb on + strand at 4416.707 kb on - strand at 4416.826 kb on + strand at 4416.854 kb on + strand at 4416.855 kb on - strand at 4416.879 kb on + strand at 4416.880 kb on - strand at 4416.941 kb on + strand at 4416.966 kb on + strand at 4416.998 kb on - strand at 4416.998 kb on - strand at 4417.034 kb on - strand at 4417.044 kb on + strand at 4417.046 kb on + strand at 4417.046 kb on + strand at 4417.046 kb on + strand at 4417.047 kb on - strand at 4417.047 kb on - strand at 4417.047 kb on - strand at 4417.111 kb on + strand at 4417.112 kb on - strand at 4417.139 kb on - strand at 4417.146 kb on - strand at 4417.164 kb on - strand at 4417.207 kb on - strand at 4417.303 kb on + strand, within LU632_RS23175 at 4417.303 kb on + strand, within LU632_RS23175 at 4417.303 kb on + strand, within LU632_RS23175 at 4417.303 kb on + strand, within LU632_RS23175 at 4417.303 kb on + strand, within LU632_RS23175 at 4417.304 kb on - strand, within LU632_RS23175 at 4417.304 kb on - strand, within LU632_RS23175 at 4417.304 kb on - strand, within LU632_RS23175 at 4417.304 kb on - strand, within LU632_RS23175 at 4417.304 kb on - strand, within LU632_RS23175 at 4417.392 kb on - strand, within LU632_RS23175 at 4417.648 kb on - strand, within LU632_RS23180 at 4417.691 kb on + strand, within LU632_RS23180 at 4417.691 kb on + strand, within LU632_RS23180 at 4417.752 kb on + strand at 4417.752 kb on + strand at 4417.849 kb on + strand at 4417.862 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 4,416,348 + LU632_RS23170 0.72 +0.7 4,416,410 - LU632_RS23170 0.80 +0.0 4,416,468 + LU632_RS23170 0.87 -1.2 4,416,478 - LU632_RS23170 0.88 -0.6 4,416,528 + -0.6 4,416,528 + +0.8 4,416,552 + -0.4 4,416,574 - -0.1 4,416,617 + -1.6 4,416,646 + +0.6 4,416,646 + -1.3 4,416,652 + -0.4 4,416,707 - +0.0 4,416,826 + +1.5 4,416,854 + -1.1 4,416,855 - +0.7 4,416,879 + +1.5 4,416,880 - +0.1 4,416,941 + +0.1 4,416,966 + -1.0 4,416,998 - -0.4 4,416,998 - -0.4 4,417,034 - +1.3 4,417,044 + -1.3 4,417,046 + -2.1 4,417,046 + -0.9 4,417,046 + -0.4 4,417,047 - -0.5 4,417,047 - -0.3 4,417,047 - -0.6 4,417,111 + +1.2 4,417,112 - -0.5 4,417,139 - +0.1 4,417,146 - +0.7 4,417,164 - -0.3 4,417,207 - +1.5 4,417,303 + LU632_RS23175 0.10 +1.7 4,417,303 + LU632_RS23175 0.10 +0.2 4,417,303 + LU632_RS23175 0.10 -0.1 4,417,303 + LU632_RS23175 0.10 -0.3 4,417,303 + LU632_RS23175 0.10 +0.2 4,417,304 - LU632_RS23175 0.10 -0.3 4,417,304 - LU632_RS23175 0.10 -1.6 4,417,304 - LU632_RS23175 0.10 -1.4 4,417,304 - LU632_RS23175 0.10 -0.3 4,417,304 - LU632_RS23175 0.10 +0.7 4,417,392 - LU632_RS23175 0.43 +1.5 4,417,648 - LU632_RS23180 0.19 -0.8 4,417,691 + LU632_RS23180 0.66 -0.8 4,417,691 + LU632_RS23180 0.66 -1.1 4,417,752 + -0.6 4,417,752 + +0.3 4,417,849 + +1.2 4,417,862 + +2.0
Or see this region's nucleotide sequence