Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22890

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
4,356,529	+				+0.9
4,356,530	-				-0.6
4,356,536	+				-2.0
4,356,569	+				+1.2
4,356,570	-				-0.6
4,356,572	+				+3.2
4,356,572	+				-0.4
4,356,592	+				+0.0
4,356,592	+				-1.0
4,356,597	-		LU632_RS22880	0.17	-2.3
4,356,606	+		LU632_RS22880	0.19	-0.1
4,356,607	-		LU632_RS22880	0.20	-0.0
4,356,758	-		LU632_RS22880	0.57	-1.4
4,356,830	+		LU632_RS22880	0.75	-0.3
4,356,831	-		LU632_RS22880	0.75	+0.8
4,356,831	-		LU632_RS22880	0.75	-0.2
4,356,866	-		LU632_RS22880	0.83	+0.2
4,356,884	+		LU632_RS22880	0.88	-0.4
4,356,885	-		LU632_RS22880	0.88	-0.0
4,356,885	-		LU632_RS22880	0.88	-2.1
4,356,885	-		LU632_RS22880	0.88	+0.6
4,356,923	-				+0.4
4,356,933	+				+2.0
4,356,933	+				+0.4
4,356,934	-				+4.5
4,356,934	-				+3.0
4,356,938	-				-0.6
4,356,997	+		LU632_RS22885	0.15	-0.3
4,357,021	+		LU632_RS22885	0.20	-0.3
4,357,021	+		LU632_RS22885	0.20	+0.2
4,357,021	+		LU632_RS22885	0.20	-0.8
4,357,021	+		LU632_RS22885	0.20	+1.4
4,357,022	-		LU632_RS22885	0.20	-0.3
4,357,022	-		LU632_RS22885	0.20	+0.2
4,357,022	-		LU632_RS22885	0.20	+0.0
4,357,022	-		LU632_RS22885	0.20	+0.6
4,357,086	+		LU632_RS22885	0.33	-0.5
4,357,126	-		LU632_RS22885	0.41	+1.5
4,357,126	-		LU632_RS22885	0.41	-1.4
4,357,188	+		LU632_RS22885	0.53	-0.2
4,357,188	+		LU632_RS22885	0.53	+1.3
4,357,207	+		LU632_RS22885	0.57	+0.6
4,357,251	+		LU632_RS22885	0.66	+0.4
4,357,252	-		LU632_RS22885	0.66	-1.7
4,357,252	-		LU632_RS22885	0.66	-0.5
4,357,252	-		LU632_RS22885	0.66	-0.7
4,357,321	+		LU632_RS22885	0.80	-1.1
4,357,322	-		LU632_RS22885	0.80	-0.1
4,357,391	+				+0.2
4,357,414	-				+0.8
4,357,550	-		LU632_RS22890	0.24	-1.1
4,357,626	-		LU632_RS22890	0.37	+0.5
4,357,838	+		LU632_RS22890	0.73	-0.7
4,357,839	-		LU632_RS22890	0.73	+0.1
4,357,839	-		LU632_RS22890	0.73	-1.5
4,357,839	-		LU632_RS22890	0.73	-0.7
4,357,958	+				+0.9
4,358,171	+	pilM	LU632_RS22895	0.21	-0.6
4,358,171	+	pilM	LU632_RS22895	0.21	+1.4
4,358,249	+	pilM	LU632_RS22895	0.31	+4.1
4,358,250	-	pilM	LU632_RS22895	0.31	+1.2
4,358,250	-	pilM	LU632_RS22895	0.31	+0.4
4,358,307	+	pilM	LU632_RS22895	0.38	-0.9
4,358,307	+	pilM	LU632_RS22895	0.38	+0.2
4,358,308	-	pilM	LU632_RS22895	0.38	-0.5
4,358,308	-	pilM	LU632_RS22895	0.38	-0.5
4,358,308	-	pilM	LU632_RS22895	0.38	-1.1
4,358,308	-	pilM	LU632_RS22895	0.38	-1.1
4,358,308	-	pilM	LU632_RS22895	0.38	+0.6
4,358,428	+	pilM	LU632_RS22895	0.52	+0.1
4,358,443	+	pilM	LU632_RS22895	0.54	-1.8
4,358,443	+	pilM	LU632_RS22895	0.54	+1.2
4,358,443	+	pilM	LU632_RS22895	0.54	-0.4
4,358,444	-	pilM	LU632_RS22895	0.54	+0.4
4,358,444	-	pilM	LU632_RS22895	0.54	+0.8
4,358,444	-	pilM	LU632_RS22895	0.54	-0.7
4,358,520	-	pilM	LU632_RS22895	0.64	+0.5
4,358,614	-	pilM	LU632_RS22895	0.75	-0.8
4,358,655	+	pilM	LU632_RS22895	0.80	-3.1
4,358,660	-	pilM	LU632_RS22895	0.80	-1.2
4,358,728	+	pilM	LU632_RS22895	0.89	+0.8
4,358,786	-				+0.8
4,358,786	-				+0.2
4,358,786	-				-0.7
4,358,786	-				+0.6
4,358,812	-				+1.2
4,358,919	+				-0.8
4,358,936	+				-0.4