Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroB and aroK are separated by 50 nucleotides aroK and hofQ are separated by 382 nucleotides
LU632_RS22865: aroB - 3-dehydroquinate synthase, at 4,353,293 to 4,354,381
aroB
LU632_RS22870: aroK - shikimate kinase AroK, at 4,354,432 to 4,354,953
aroK
LU632_RS22875: hofQ - DNA uptake porin HofQ, at 4,355,336 to 4,356,592
hofQ
Position (kb) 4354
4355 Strain fitness (log2 ratio) -1
0
1
2
3 at 4353.439 kb on - strand, within aroB at 4353.439 kb on - strand, within aroB at 4353.503 kb on - strand, within aroB at 4353.824 kb on - strand, within aroB at 4353.824 kb on - strand, within aroB at 4354.010 kb on - strand, within aroB at 4354.157 kb on - strand, within aroB at 4354.197 kb on - strand, within aroB at 4354.197 kb on - strand, within aroB at 4354.224 kb on - strand, within aroB at 4354.389 kb on - strand at 4354.389 kb on - strand at 4354.453 kb on - strand at 4355.195 kb on - strand at 4355.198 kb on + strand at 4355.199 kb on - strand at 4355.199 kb on - strand at 4355.199 kb on - strand at 4355.199 kb on - strand at 4355.281 kb on - strand at 4355.281 kb on - strand at 4355.362 kb on + strand at 4355.389 kb on + strand at 4355.562 kb on + strand, within hofQ at 4355.579 kb on - strand, within hofQ at 4355.645 kb on + strand, within hofQ at 4355.646 kb on - strand, within hofQ at 4355.657 kb on + strand, within hofQ at 4355.658 kb on - strand, within hofQ at 4355.658 kb on - strand, within hofQ at 4355.698 kb on + strand, within hofQ at 4355.698 kb on + strand, within hofQ at 4355.698 kb on + strand, within hofQ at 4355.699 kb on - strand, within hofQ at 4355.798 kb on - strand, within hofQ at 4355.843 kb on + strand, within hofQ at 4355.843 kb on + strand, within hofQ at 4355.847 kb on - strand, within hofQ at 4355.873 kb on + strand, within hofQ at 4355.873 kb on + strand, within hofQ
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 4,353,439 - aroB LU632_RS22865 0.13 -0.4 4,353,439 - aroB LU632_RS22865 0.13 +2.2 4,353,503 - aroB LU632_RS22865 0.19 -1.1 4,353,824 - aroB LU632_RS22865 0.49 -0.8 4,353,824 - aroB LU632_RS22865 0.49 +0.6 4,354,010 - aroB LU632_RS22865 0.66 +0.2 4,354,157 - aroB LU632_RS22865 0.79 -0.8 4,354,197 - aroB LU632_RS22865 0.83 +0.2 4,354,197 - aroB LU632_RS22865 0.83 +0.6 4,354,224 - aroB LU632_RS22865 0.85 +2.2 4,354,389 - -0.4 4,354,389 - -1.5 4,354,453 - -0.4 4,355,195 - -1.0 4,355,198 + +1.2 4,355,199 - +3.2 4,355,199 - -1.6 4,355,199 - -1.4 4,355,199 - +0.4 4,355,281 - -0.1 4,355,281 - +0.6 4,355,362 + -0.4 4,355,389 + +3.3 4,355,562 + hofQ LU632_RS22875 0.18 +1.1 4,355,579 - hofQ LU632_RS22875 0.19 -0.1 4,355,645 + hofQ LU632_RS22875 0.25 +0.2 4,355,646 - hofQ LU632_RS22875 0.25 -1.0 4,355,657 + hofQ LU632_RS22875 0.26 +0.9 4,355,658 - hofQ LU632_RS22875 0.26 -0.5 4,355,658 - hofQ LU632_RS22875 0.26 -0.6 4,355,698 + hofQ LU632_RS22875 0.29 -0.8 4,355,698 + hofQ LU632_RS22875 0.29 -0.5 4,355,698 + hofQ LU632_RS22875 0.29 +1.2 4,355,699 - hofQ LU632_RS22875 0.29 -0.5 4,355,798 - hofQ LU632_RS22875 0.37 -1.1 4,355,843 + hofQ LU632_RS22875 0.40 +1.6 4,355,843 + hofQ LU632_RS22875 0.40 -0.1 4,355,847 - hofQ LU632_RS22875 0.41 -0.6 4,355,873 + hofQ LU632_RS22875 0.43 -0.8 4,355,873 + hofQ LU632_RS22875 0.43 -0.1
Or see this region's nucleotide sequence