Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS21640 and LU632_RS21645 overlap by 82 nucleotides LU632_RS21645 and LU632_RS21650 are separated by 92 nucleotides LU632_RS21650 and LU632_RS21655 overlap by 14 nucleotides LU632_RS21655 and ampH are separated by 603 nucleotides
LU632_RS21640: LU632_RS21640 - IS1 family transposase, at 4,138,594 to 4,139,097
_RS21640
LU632_RS21645: LU632_RS21645 - transposase, at 4,139,016 to 4,139,291
_RS21645
LU632_RS21650: LU632_RS21650 - hypothetical protein, at 4,139,384 to 4,139,737
_RS21650
LU632_RS21655: LU632_RS21655 - pesticin C-terminus-like muramidase, at 4,139,724 to 4,140,371
_RS21655
LU632_RS21660: ampH - D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH, at 4,140,975 to 4,142,168
ampH
Position (kb) 4139
4140
4141 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4140.412 kb on + strand at 4140.420 kb on + strand at 4140.469 kb on + strand at 4140.513 kb on - strand at 4140.513 kb on - strand at 4140.515 kb on - strand at 4140.613 kb on - strand at 4140.631 kb on + strand at 4140.632 kb on - strand at 4140.632 kb on - strand at 4140.650 kb on + strand at 4140.651 kb on - strand at 4140.986 kb on + strand at 4140.986 kb on + strand at 4140.989 kb on + strand at 4140.990 kb on - strand at 4141.134 kb on - strand, within ampH at 4141.139 kb on + strand, within ampH at 4141.139 kb on + strand, within ampH at 4141.139 kb on + strand, within ampH at 4141.140 kb on - strand, within ampH at 4141.140 kb on - strand, within ampH at 4141.140 kb on - strand, within ampH at 4141.140 kb on - strand, within ampH at 4141.140 kb on - strand, within ampH at 4141.140 kb on - strand, within ampH at 4141.140 kb on - strand, within ampH at 4141.140 kb on - strand, within ampH at 4141.141 kb on + strand, within ampH at 4141.141 kb on + strand, within ampH at 4141.141 kb on + strand, within ampH at 4141.141 kb on + strand, within ampH at 4141.141 kb on + strand, within ampH at 4141.141 kb on + strand, within ampH at 4141.142 kb on - strand, within ampH at 4141.142 kb on - strand, within ampH at 4141.142 kb on - strand, within ampH at 4141.142 kb on - strand, within ampH at 4141.142 kb on - strand, within ampH at 4141.142 kb on - strand, within ampH at 4141.142 kb on - strand, within ampH at 4141.142 kb on - strand, within ampH at 4141.178 kb on + strand, within ampH at 4141.211 kb on - strand, within ampH
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 4,140,412 + +0.1 4,140,420 + -0.7 4,140,469 + +1.9 4,140,513 - +0.2 4,140,513 - -0.8 4,140,515 - -0.4 4,140,613 - -1.4 4,140,631 + +0.2 4,140,632 - +0.7 4,140,632 - +0.7 4,140,650 + +4.4 4,140,651 - -0.3 4,140,986 + -2.2 4,140,986 + +1.7 4,140,989 + -0.1 4,140,990 - +1.0 4,141,134 - ampH LU632_RS21660 0.13 -0.1 4,141,139 + ampH LU632_RS21660 0.14 -0.5 4,141,139 + ampH LU632_RS21660 0.14 +0.1 4,141,139 + ampH LU632_RS21660 0.14 +1.5 4,141,140 - ampH LU632_RS21660 0.14 +0.1 4,141,140 - ampH LU632_RS21660 0.14 -0.6 4,141,140 - ampH LU632_RS21660 0.14 -0.8 4,141,140 - ampH LU632_RS21660 0.14 -1.5 4,141,140 - ampH LU632_RS21660 0.14 -1.2 4,141,140 - ampH LU632_RS21660 0.14 -2.6 4,141,140 - ampH LU632_RS21660 0.14 -0.5 4,141,140 - ampH LU632_RS21660 0.14 -0.9 4,141,141 + ampH LU632_RS21660 0.14 -0.7 4,141,141 + ampH LU632_RS21660 0.14 +0.8 4,141,141 + ampH LU632_RS21660 0.14 +0.4 4,141,141 + ampH LU632_RS21660 0.14 +0.4 4,141,141 + ampH LU632_RS21660 0.14 -1.8 4,141,141 + ampH LU632_RS21660 0.14 +0.1 4,141,142 - ampH LU632_RS21660 0.14 -2.0 4,141,142 - ampH LU632_RS21660 0.14 -0.3 4,141,142 - ampH LU632_RS21660 0.14 +0.5 4,141,142 - ampH LU632_RS21660 0.14 -0.3 4,141,142 - ampH LU632_RS21660 0.14 -1.1 4,141,142 - ampH LU632_RS21660 0.14 +0.5 4,141,142 - ampH LU632_RS21660 0.14 -0.8 4,141,142 - ampH LU632_RS21660 0.14 +0.2 4,141,178 + ampH LU632_RS21660 0.17 +0.5 4,141,211 - ampH LU632_RS21660 0.20 -0.4
Or see this region's nucleotide sequence