Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21455

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
4,103,568	+				-2.3
4,103,660	+				-0.9
4,103,660	+				-1.7
4,103,661	-				+0.9
4,103,661	-				-0.2
4,103,661	-				+0.6
4,103,665	+				-1.9
4,103,666	-				+1.6
4,103,666	-				+1.4
4,103,688	-				+1.3
4,103,755	-				-3.1
4,103,791	-				-1.5
4,103,844	+				-0.4
4,103,844	+				-1.5
4,103,845	-				-0.6
4,103,936	-				-0.6
4,103,999	-	csrD	LU632_RS21455	0.11	-1.4
4,104,022	+	csrD	LU632_RS21455	0.12	+0.2
4,104,022	+	csrD	LU632_RS21455	0.12	-0.6
4,104,049	+	csrD	LU632_RS21455	0.14	-1.2
4,104,050	-	csrD	LU632_RS21455	0.14	-2.2
4,104,051	+	csrD	LU632_RS21455	0.14	-0.6
4,104,051	+	csrD	LU632_RS21455	0.14	-0.3
4,104,052	-	csrD	LU632_RS21455	0.14	-1.0
4,104,052	-	csrD	LU632_RS21455	0.14	-0.4
4,104,145	+	csrD	LU632_RS21455	0.19	-1.3
4,104,145	+	csrD	LU632_RS21455	0.19	-0.6
4,104,145	+	csrD	LU632_RS21455	0.19	-0.8
4,104,146	-	csrD	LU632_RS21455	0.19	-0.1
4,104,146	-	csrD	LU632_RS21455	0.19	-0.3
4,104,146	-	csrD	LU632_RS21455	0.19	+2.2
4,104,155	+	csrD	LU632_RS21455	0.19	+1.5
4,104,156	-	csrD	LU632_RS21455	0.19	-2.1
4,104,156	-	csrD	LU632_RS21455	0.19	+2.2
4,104,180	-	csrD	LU632_RS21455	0.21	-1.4
4,104,207	+	csrD	LU632_RS21455	0.22	-0.2
4,104,208	-	csrD	LU632_RS21455	0.22	-1.4
4,104,216	-	csrD	LU632_RS21455	0.22	-1.3
4,104,221	-	csrD	LU632_RS21455	0.23	-0.2
4,104,330	-	csrD	LU632_RS21455	0.28	-0.6
4,104,330	-	csrD	LU632_RS21455	0.28	-0.3
4,104,330	-	csrD	LU632_RS21455	0.28	-1.7
4,104,342	+	csrD	LU632_RS21455	0.29	-0.8
4,104,342	+	csrD	LU632_RS21455	0.29	+0.4
4,104,343	-	csrD	LU632_RS21455	0.29	-0.7
4,104,427	+	csrD	LU632_RS21455	0.33	+1.2
4,104,428	-	csrD	LU632_RS21455	0.33	-0.7
4,104,500	+	csrD	LU632_RS21455	0.37	-0.8
4,104,500	+	csrD	LU632_RS21455	0.37	+0.9
4,104,515	+	csrD	LU632_RS21455	0.38	+0.5
4,104,530	+	csrD	LU632_RS21455	0.38	+0.6
4,104,580	+	csrD	LU632_RS21455	0.41	-0.2
4,104,631	+	csrD	LU632_RS21455	0.44	+1.8
4,104,670	+	csrD	LU632_RS21455	0.46	-0.9
4,104,676	+	csrD	LU632_RS21455	0.46	-2.1
4,104,677	-	csrD	LU632_RS21455	0.46	-1.7
4,104,698	+	csrD	LU632_RS21455	0.47	-0.4
4,104,698	+	csrD	LU632_RS21455	0.47	+0.6
4,104,699	-	csrD	LU632_RS21455	0.47	-1.9
4,104,699	-	csrD	LU632_RS21455	0.47	+0.3
4,104,879	+	csrD	LU632_RS21455	0.56	-0.2
4,104,879	+	csrD	LU632_RS21455	0.56	+0.6
4,104,880	-	csrD	LU632_RS21455	0.56	-1.5
4,104,880	-	csrD	LU632_RS21455	0.56	-0.7
4,104,880	-	csrD	LU632_RS21455	0.56	-0.0
4,104,880	-	csrD	LU632_RS21455	0.56	-2.0
4,105,064	+	csrD	LU632_RS21455	0.66	-1.0
4,105,064	+	csrD	LU632_RS21455	0.66	-0.6
4,105,064	+	csrD	LU632_RS21455	0.66	+1.0
4,105,065	-	csrD	LU632_RS21455	0.66	-0.9
4,105,065	-	csrD	LU632_RS21455	0.66	+0.4
4,105,070	-	csrD	LU632_RS21455	0.66	-0.8
4,105,070	-	csrD	LU632_RS21455	0.66	+1.2
4,105,116	-	csrD	LU632_RS21455	0.69	-2.3
4,105,157	+	csrD	LU632_RS21455	0.71	-1.3
4,105,175	-	csrD	LU632_RS21455	0.72	-1.4
4,105,177	+	csrD	LU632_RS21455	0.72	-2.8
4,105,178	-	csrD	LU632_RS21455	0.72	-1.4
4,105,247	+	csrD	LU632_RS21455	0.75	-0.7
4,105,247	+	csrD	LU632_RS21455	0.75	-2.5
4,105,247	+	csrD	LU632_RS21455	0.75	-2.0
4,105,247	+	csrD	LU632_RS21455	0.75	-1.3
4,105,248	-	csrD	LU632_RS21455	0.75	+0.8
4,105,306	+	csrD	LU632_RS21455	0.78	-0.1
4,105,315	+	csrD	LU632_RS21455	0.79	+0.3
4,105,315	+	csrD	LU632_RS21455	0.79	-0.4
4,105,316	-	csrD	LU632_RS21455	0.79	-1.6
4,105,398	-	csrD	LU632_RS21455	0.83	+0.2
4,105,402	+	csrD	LU632_RS21455	0.83	-1.0
4,105,402	+	csrD	LU632_RS21455	0.83	-0.8
4,105,402	+	csrD	LU632_RS21455	0.83	+0.6
4,105,402	+	csrD	LU632_RS21455	0.83	-1.7
4,105,402	+	csrD	LU632_RS21455	0.83	+1.5
4,105,403	-	csrD	LU632_RS21455	0.83	+2.2
4,105,403	-	csrD	LU632_RS21455	0.83	-0.6
4,105,403	-	csrD	LU632_RS21455	0.83	-1.5
4,105,403	-	csrD	LU632_RS21455	0.83	-0.5
4,105,403	-	csrD	LU632_RS21455	0.83	-0.1
4,105,403	-	csrD	LU632_RS21455	0.83	-2.8
4,105,403	-	csrD	LU632_RS21455	0.83	-0.9
4,105,408	+	csrD	LU632_RS21455	0.83	-1.4
4,105,408	+	csrD	LU632_RS21455	0.83	-0.7
4,105,419	+	csrD	LU632_RS21455	0.84	-1.8
4,105,481	-	csrD	LU632_RS21455	0.87	-0.4
4,105,586	-				+1.0
4,105,605	-				+1.8
4,105,646	+				+0.6
4,105,646	+				+0.2
4,105,646	+				-0.3
4,105,647	-				-0.8
4,105,647	-				-1.3
4,105,649	+				-0.5
4,105,650	-				-0.3
4,105,671	-				+0.3
4,105,721	+				-0.8
4,105,783	+				-0.1
4,105,809	+				-0.9
4,105,809	+				-0.5
4,105,814	+				-1.6
4,105,870	+				-1.4
4,105,892	+				+0.3
4,105,892	+				-1.5
4,105,892	+				-2.3
4,105,893	-				+1.6
4,106,022	+		LU632_RS21460	0.10	+0.4
4,106,023	-		LU632_RS21460	0.10	-0.2
4,106,023	-		LU632_RS21460	0.10	+1.5
4,106,023	-		LU632_RS21460	0.10	+1.9
4,106,042	+		LU632_RS21460	0.12	+0.2
4,106,042	+		LU632_RS21460	0.12	-0.1
4,106,081	-		LU632_RS21460	0.16	-0.2
4,106,177	-		LU632_RS21460	0.26	+1.0
4,106,291	-		LU632_RS21460	0.38	-0.6
4,106,319	+		LU632_RS21460	0.41	-0.4
4,106,500	-		LU632_RS21460	0.59	+1.6
4,106,504	+		LU632_RS21460	0.60	+0.4
4,106,504	+		LU632_RS21460	0.60	-0.3
4,106,504	+		LU632_RS21460	0.60	+1.1
4,106,504	+		LU632_RS21460	0.60	+0.4
4,106,505	-		LU632_RS21460	0.60	-1.8
4,106,505	-		LU632_RS21460	0.60	+1.5
4,106,567	+		LU632_RS21460	0.66	+0.5
4,106,567	+		LU632_RS21460	0.66	-1.3
4,106,568	-		LU632_RS21460	0.66	-0.8
4,106,568	-		LU632_RS21460	0.66	-0.8
4,106,571	+		LU632_RS21460	0.67	-0.6
4,106,571	+		LU632_RS21460	0.67	-2.4
4,106,572	-		LU632_RS21460	0.67	+0.4
4,106,572	-		LU632_RS21460	0.67	-0.1
4,106,572	-		LU632_RS21460	0.67	+0.5
4,106,572	-		LU632_RS21460	0.67	-1.0
4,106,572	-		LU632_RS21460	0.67	-1.3
4,106,572	-		LU632_RS21460	0.67	+0.6
4,106,572	-		LU632_RS21460	0.67	+0.9
4,106,685	+		LU632_RS21460	0.78	+1.2
4,106,686	-		LU632_RS21460	0.78	+1.2
4,106,719	+		LU632_RS21460	0.82	+0.5
4,106,720	-		LU632_RS21460	0.82	-0.3