Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21425

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
4,094,140	-	tldD	LU632_RS21420	0.52	-1.6
4,094,349	-	tldD	LU632_RS21420	0.66	-1.0
4,094,459	-	tldD	LU632_RS21420	0.74	+0.8
4,094,508	+	tldD	LU632_RS21420	0.77	-2.5
4,094,650	+	tldD	LU632_RS21420	0.87	+0.0
4,094,650	+	tldD	LU632_RS21420	0.87	-2.0
4,094,650	+	tldD	LU632_RS21420	0.87	-3.0
4,094,650	+	tldD	LU632_RS21420	0.87	-1.4
4,094,650	+	tldD	LU632_RS21420	0.87	-0.5
4,094,651	-	tldD	LU632_RS21420	0.87	-1.8
4,094,651	-	tldD	LU632_RS21420	0.87	-3.2
4,094,651	-	tldD	LU632_RS21420	0.87	-0.6
4,094,651	-	tldD	LU632_RS21420	0.87	+0.0
4,094,651	-	tldD	LU632_RS21420	0.87	+1.6
4,094,651	-	tldD	LU632_RS21420	0.87	-0.6
4,094,652	+	tldD	LU632_RS21420	0.87	-1.5
4,094,752	+				-1.8
4,094,753	-				-0.7
4,094,787	+				-1.6
4,094,790	-				-0.5
4,094,791	-				-0.8
4,094,818	+				-0.6
4,094,837	+				-0.2
4,094,837	+				+1.6
4,094,838	-				+0.0
4,094,886	-				+0.5
4,094,990	+				+0.1
4,094,990	+				-0.3
4,094,991	-				-1.0
4,094,991	-				+1.0
4,094,991	-				+0.6
4,094,991	-				+1.0
4,095,137	+				-0.8
4,095,137	+				+0.2
4,095,137	+				-1.0
4,095,269	-				+0.4
4,095,467	-	yhdP	LU632_RS21425	0.14	+0.4
4,095,476	+	yhdP	LU632_RS21425	0.15	-0.7
4,095,476	+	yhdP	LU632_RS21425	0.15	+0.9
4,095,477	-	yhdP	LU632_RS21425	0.15	+0.9
4,095,656	+	yhdP	LU632_RS21425	0.19	-0.4
4,095,657	-	yhdP	LU632_RS21425	0.19	-0.5
4,095,768	-	yhdP	LU632_RS21425	0.22	-0.2
4,095,768	-	yhdP	LU632_RS21425	0.22	+1.3
4,095,768	-	yhdP	LU632_RS21425	0.22	+0.1
4,095,768	-	yhdP	LU632_RS21425	0.22	-0.4
4,095,780	-	yhdP	LU632_RS21425	0.23	-0.7
4,095,791	+	yhdP	LU632_RS21425	0.23	-1.0
4,095,820	+	yhdP	LU632_RS21425	0.24	-2.3
4,095,821	-	yhdP	LU632_RS21425	0.24	-0.9
4,095,829	+	yhdP	LU632_RS21425	0.24	+4.8
4,095,829	+	yhdP	LU632_RS21425	0.24	-1.1
4,095,830	-	yhdP	LU632_RS21425	0.24	-2.1
4,095,833	+	yhdP	LU632_RS21425	0.24	-0.3
4,095,978	+	yhdP	LU632_RS21425	0.28	-0.8
4,096,012	+	yhdP	LU632_RS21425	0.29	+0.1
4,096,012	+	yhdP	LU632_RS21425	0.29	-1.3
4,096,012	+	yhdP	LU632_RS21425	0.29	-0.7
4,096,012	+	yhdP	LU632_RS21425	0.29	-1.2
4,096,013	-	yhdP	LU632_RS21425	0.29	-0.3
4,096,112	+	yhdP	LU632_RS21425	0.31	-2.3
4,096,112	+	yhdP	LU632_RS21425	0.31	-1.5
4,096,113	-	yhdP	LU632_RS21425	0.31	+4.7
4,096,113	-	yhdP	LU632_RS21425	0.31	-0.5
4,096,118	+	yhdP	LU632_RS21425	0.31	-1.0
4,096,118	+	yhdP	LU632_RS21425	0.31	+0.4
4,096,118	+	yhdP	LU632_RS21425	0.31	-1.1
4,096,119	-	yhdP	LU632_RS21425	0.32	-0.9
4,096,119	-	yhdP	LU632_RS21425	0.32	+1.8
4,096,251	-	yhdP	LU632_RS21425	0.35	-1.3
4,096,321	-	yhdP	LU632_RS21425	0.37	-0.2
4,096,324	+	yhdP	LU632_RS21425	0.37	-0.6
4,096,324	+	yhdP	LU632_RS21425	0.37	-1.4
4,096,324	+	yhdP	LU632_RS21425	0.37	-1.3
4,096,325	-	yhdP	LU632_RS21425	0.37	+0.0
4,096,325	-	yhdP	LU632_RS21425	0.37	-1.7
4,096,401	+	yhdP	LU632_RS21425	0.39	-1.1
4,096,401	+	yhdP	LU632_RS21425	0.39	-1.5
4,096,402	-	yhdP	LU632_RS21425	0.39	-0.1
4,096,406	+	yhdP	LU632_RS21425	0.39	+0.6
4,096,406	+	yhdP	LU632_RS21425	0.39	-1.3
4,096,503	+	yhdP	LU632_RS21425	0.42	-0.6
4,096,504	-	yhdP	LU632_RS21425	0.42	+1.4
4,096,655	+	yhdP	LU632_RS21425	0.46	-1.0
4,096,655	+	yhdP	LU632_RS21425	0.46	-0.0
4,096,656	-	yhdP	LU632_RS21425	0.46	+1.2
4,096,659	+	yhdP	LU632_RS21425	0.46	-1.9
4,096,659	+	yhdP	LU632_RS21425	0.46	-0.6
4,096,660	-	yhdP	LU632_RS21425	0.46	+3.4
4,096,660	-	yhdP	LU632_RS21425	0.46	-0.5
4,096,731	+	yhdP	LU632_RS21425	0.48	+0.3
4,096,731	+	yhdP	LU632_RS21425	0.48	+0.9
4,096,731	+	yhdP	LU632_RS21425	0.48	-1.5
4,096,731	+	yhdP	LU632_RS21425	0.48	-0.4
4,096,813	+	yhdP	LU632_RS21425	0.50	-0.9
4,096,813	+	yhdP	LU632_RS21425	0.50	-1.2
4,096,813	+	yhdP	LU632_RS21425	0.50	-0.5
4,096,845	-	yhdP	LU632_RS21425	0.51	-1.1
4,097,135	+	yhdP	LU632_RS21425	0.58	-1.1
4,097,150	-	yhdP	LU632_RS21425	0.59	-0.9
4,097,150	-	yhdP	LU632_RS21425	0.59	+0.1
4,097,366	+	yhdP	LU632_RS21425	0.64	-2.5
4,097,383	-	yhdP	LU632_RS21425	0.65	-0.8
4,097,383	-	yhdP	LU632_RS21425	0.65	+0.4
4,097,525	+	yhdP	LU632_RS21425	0.68	-0.6
4,097,526	-	yhdP	LU632_RS21425	0.68	+2.8
4,097,526	-	yhdP	LU632_RS21425	0.68	+0.6
4,097,526	-	yhdP	LU632_RS21425	0.68	-0.1
4,097,599	-	yhdP	LU632_RS21425	0.70	-3.0
4,097,599	-	yhdP	LU632_RS21425	0.70	-0.9
4,097,695	-	yhdP	LU632_RS21425	0.73	+2.3
4,097,767	-	yhdP	LU632_RS21425	0.75	+1.2
4,097,767	-	yhdP	LU632_RS21425	0.75	-1.4
4,097,799	-	yhdP	LU632_RS21425	0.76	+0.6
4,097,808	-	yhdP	LU632_RS21425	0.76	-0.1
4,097,849	+	yhdP	LU632_RS21425	0.77	-0.0
4,097,853	+	yhdP	LU632_RS21425	0.77	-1.3
4,097,874	-	yhdP	LU632_RS21425	0.78	+0.2
4,097,954	-	yhdP	LU632_RS21425	0.80	-0.7
4,097,954	-	yhdP	LU632_RS21425	0.80	-0.7
4,097,954	-	yhdP	LU632_RS21425	0.80	-0.5
4,098,009	+	yhdP	LU632_RS21425	0.81	-0.4
4,098,010	-	yhdP	LU632_RS21425	0.81	-0.6
4,098,017	+	yhdP	LU632_RS21425	0.81	-0.9
4,098,018	-	yhdP	LU632_RS21425	0.81	-1.1
4,098,018	-	yhdP	LU632_RS21425	0.81	-0.1
4,098,098	-	yhdP	LU632_RS21425	0.84	-1.2
4,098,172	-	yhdP	LU632_RS21425	0.85	-1.1
4,098,265	-	yhdP	LU632_RS21425	0.88	+0.6
4,098,318	+	yhdP	LU632_RS21425	0.89	-0.5
4,098,351	-				-0.4
4,098,394	+				-0.8
4,098,394	+				-0.8
4,098,394	+				+0.4
4,098,394	+				-1.2
4,098,401	+				+0.4
4,098,401	+				-1.3
4,098,548	+				-0.8
4,098,596	+				-2.0
4,098,597	-				+0.1
4,098,684	-				-0.6
4,098,700	-				+0.2
4,098,813	+				+2.4
4,098,899	+				+0.6
4,098,900	-				-0.8
4,098,900	-				+1.2
4,098,963	-	rng	LU632_RS21430	0.14	+0.7
4,099,038	+	rng	LU632_RS21430	0.19	+0.9
4,099,182	+	rng	LU632_RS21430	0.29	-0.1
4,099,212	+	rng	LU632_RS21430	0.31	-0.4
4,099,261	-	rng	LU632_RS21430	0.34	+1.9
4,099,284	+	rng	LU632_RS21430	0.36	+0.6
4,099,449	-	rng	LU632_RS21430	0.47	+1.2
4,099,481	+	rng	LU632_RS21430	0.49	+2.2
4,099,481	+	rng	LU632_RS21430	0.49	+1.6
4,099,481	+	rng	LU632_RS21430	0.49	-0.7
4,099,481	+	rng	LU632_RS21430	0.49	+0.2
4,099,481	+	rng	LU632_RS21430	0.49	+0.2
4,099,481	+	rng	LU632_RS21430	0.49	-0.1
4,099,481	+	rng	LU632_RS21430	0.49	-1.4
4,099,482	-	rng	LU632_RS21430	0.49	+0.6
4,099,511	+	rng	LU632_RS21430	0.51	-0.3
4,099,620	+	rng	LU632_RS21430	0.59	+0.6
4,099,714	-	rng	LU632_RS21430	0.65	-1.1
4,099,719	+	rng	LU632_RS21430	0.65	+1.7
4,099,719	+	rng	LU632_RS21430	0.65	+0.2