Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21395

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
4,087,619	+		LU632_RS21385	0.60	-0.8
4,087,657	-		LU632_RS21385	0.82	-0.5
4,088,582	-				-0.6
4,088,833	+		LU632_RS21395	0.71	+0.0
4,088,834	-		LU632_RS21395	0.71	+0.6
4,088,879	-		LU632_RS21395	0.84	-0.1
4,088,879	-		LU632_RS21395	0.84	+0.8
4,088,882	+		LU632_RS21395	0.85	-0.7
4,088,886	+		LU632_RS21395	0.86	-1.3
4,088,887	-		LU632_RS21395	0.86	-0.4
4,088,887	-		LU632_RS21395	0.86	-0.7
4,089,002	+				+0.7
4,089,002	+				-0.8
4,089,002	+				-0.8
4,089,002	+				-1.1
4,089,006	+				-0.3
4,089,006	+				+0.0
4,089,006	+				+0.8
4,089,006	+				-1.5
4,089,007	-				-1.0
4,089,007	-				+0.6
4,089,007	-				+0.6
4,089,007	-				-0.4
4,089,007	-				-1.3
4,089,008	+				+3.0
4,089,008	+				-0.1
4,089,008	+				-0.5
4,089,009	-				+0.4
4,089,009	-				+0.9
4,089,009	-				+0.6
4,089,094	+				-0.9
4,089,154	+				+0.3
4,089,154	+				+0.1
4,089,157	+				+0.2
4,089,158	-				+0.8
4,089,162	+				-0.1
4,089,162	+				-0.8
4,089,162	+				-0.5
4,089,163	-				-0.1
4,089,175	+				-1.0
4,089,175	+				-0.3
4,089,175	+				-0.3
4,089,176	-				-1.5
4,089,196	-				+3.8
4,089,221	+				+1.2
4,089,273	-	aaeB	LU632_RS21400	0.10	-0.1
4,089,314	+	aaeB	LU632_RS21400	0.13	-0.8
4,089,314	+	aaeB	LU632_RS21400	0.13	-1.1
4,089,315	-	aaeB	LU632_RS21400	0.13	-0.4
4,089,363	-	aaeB	LU632_RS21400	0.15	-0.1
4,089,383	+	aaeB	LU632_RS21400	0.16	+1.3
4,089,384	-	aaeB	LU632_RS21400	0.16	-0.2
4,089,409	+	aaeB	LU632_RS21400	0.17	+0.2
4,089,476	-	aaeB	LU632_RS21400	0.21	-1.9
4,089,479	+	aaeB	LU632_RS21400	0.21	+0.5
4,089,479	+	aaeB	LU632_RS21400	0.21	+0.1
4,089,480	-	aaeB	LU632_RS21400	0.21	-1.1
4,089,480	-	aaeB	LU632_RS21400	0.21	+1.5
4,089,516	-	aaeB	LU632_RS21400	0.23	+1.6
4,089,620	+	aaeB	LU632_RS21400	0.28	+0.4
4,089,639	-	aaeB	LU632_RS21400	0.29	-0.8
4,089,736	-	aaeB	LU632_RS21400	0.34	+1.6
4,089,740	+	aaeB	LU632_RS21400	0.34	-1.0
4,089,741	-	aaeB	LU632_RS21400	0.34	-0.5
4,089,772	+	aaeB	LU632_RS21400	0.36	-1.3
4,089,773	-	aaeB	LU632_RS21400	0.36	+1.2
4,089,773	-	aaeB	LU632_RS21400	0.36	+1.9
4,089,776	-	aaeB	LU632_RS21400	0.36	+0.4