Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21005

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
4,012,593	-		LU632_RS20995	0.51	-1.1
4,012,647	+		LU632_RS20995	0.62	+0.6
4,012,647	+		LU632_RS20995	0.62	-1.8
4,012,680	+		LU632_RS20995	0.68	+1.9
4,012,737	+		LU632_RS20995	0.80	-2.2
4,012,737	+		LU632_RS20995	0.80	+0.6
4,012,786	-		LU632_RS20995	0.89	-1.5
4,012,880	+				-2.8
4,012,881	-				-0.3
4,012,925	+		LU632_RS21000	0.18	-0.1
4,012,925	+		LU632_RS21000	0.18	-1.2
4,012,925	+		LU632_RS21000	0.18	-1.9
4,012,939	+		LU632_RS21000	0.20	-1.7
4,012,939	+		LU632_RS21000	0.20	-1.0
4,012,939	+		LU632_RS21000	0.20	-1.8
4,012,939	+		LU632_RS21000	0.20	-0.8
4,012,941	+		LU632_RS21000	0.21	+0.2
4,012,941	+		LU632_RS21000	0.21	-0.4
4,012,941	+		LU632_RS21000	0.21	-0.8
4,012,941	+		LU632_RS21000	0.21	+0.8
4,012,941	+		LU632_RS21000	0.21	+0.6
4,012,941	+		LU632_RS21000	0.21	-0.9
4,012,954	+		LU632_RS21000	0.23	-0.0
4,013,124	-		LU632_RS21000	0.56	-0.5
4,013,310	-				-0.5
4,013,310	-				-0.3
4,013,310	-				-0.3
4,013,338	+				-0.9
4,013,339	-				+1.4
4,013,339	-				-0.7
4,013,343	-				+0.2
4,013,357	+				-1.1
4,013,358	-				-0.7
4,013,387	-				+1.8
4,013,433	+				+0.2
4,013,434	-				-0.7
4,013,434	-				+1.3
4,013,434	-				+0.4
4,013,434	-				+0.8
4,013,476	+				+0.2
4,013,481	+				+0.9
4,013,483	+				-0.3
4,013,483	+				-0.4
4,013,483	+				-0.9
4,013,484	-				+0.2
4,013,484	-				-0.3
4,013,484	-				+1.7
4,013,493	-				-0.4
4,013,522	+				-0.4
4,013,522	+				+0.9
4,013,523	-				+0.3
4,013,525	-				+1.0
4,013,561	+				+2.2
4,013,635	-				+0.5
4,013,718	+		LU632_RS21005	0.16	-1.1
4,013,760	-		LU632_RS21005	0.20	+1.8
4,014,122	+		LU632_RS21005	0.56	+3.2
4,014,122	+		LU632_RS21005	0.56	+0.0
4,014,122	+		LU632_RS21005	0.56	+0.6
4,014,123	-		LU632_RS21005	0.56	-1.3
4,014,123	-		LU632_RS21005	0.56	-0.7
4,014,123	-		LU632_RS21005	0.56	-0.3
4,014,123	-		LU632_RS21005	0.56	-1.4
4,014,125	+		LU632_RS21005	0.57	-0.1
4,014,125	+		LU632_RS21005	0.57	+1.5
4,014,126	-		LU632_RS21005	0.57	+0.8
4,014,126	-		LU632_RS21005	0.57	+1.0
4,014,126	-		LU632_RS21005	0.57	-1.4
4,014,267	+		LU632_RS21005	0.71	+0.4
4,014,267	+		LU632_RS21005	0.71	+1.6
4,014,268	-		LU632_RS21005	0.71	-0.4
4,014,268	-		LU632_RS21005	0.71	-0.1
4,014,268	-		LU632_RS21005	0.71	+1.6
4,014,321	-		LU632_RS21005	0.76	+2.4
4,014,403	+		LU632_RS21005	0.84	+0.9
4,014,403	+		LU632_RS21005	0.84	+0.3
4,014,403	+		LU632_RS21005	0.84	-1.0
4,014,404	-		LU632_RS21005	0.85	-0.6
4,014,404	-		LU632_RS21005	0.85	-1.3
4,014,446	+		LU632_RS21005	0.89	+0.6
4,014,469	-				-1.5
4,014,505	+				-1.1
4,014,505	+				+0.0
4,014,538	-				-1.1
4,014,573	-				-0.4
4,014,573	-				-1.7
4,014,615	+				-1.0
4,014,616	-				-0.2
4,014,658	+		LU632_RS21010	0.10	-1.3
4,014,662	+		LU632_RS21010	0.11	+1.9
4,014,678	+		LU632_RS21010	0.13	-0.1
4,014,679	-		LU632_RS21010	0.13	+1.0
4,014,809	-		LU632_RS21010	0.27	+0.4
4,014,921	-		LU632_RS21010	0.40	-0.1
4,014,946	-		LU632_RS21010	0.43	-0.5
4,015,036	+		LU632_RS21010	0.53	-0.1
4,015,080	+		LU632_RS21010	0.57	-0.6
4,015,156	+		LU632_RS21010	0.66	-0.8
4,015,352	-		LU632_RS21010	0.88	+1.2
4,015,417	+				-2.9
4,015,418	-				+0.6
4,015,418	-				+0.4
4,015,471	-				+0.7
4,015,471	-				+0.3