Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20865

Experiment: plant=Melon; plant sample=M4; plant location=P2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntpepA and LU632_RS20860 are separated by 3 nucleotidesLU632_RS20860 and LU632_RS20865 are separated by 5 nucleotidesLU632_RS20865 and LU632_RS20870 are separated by 72 nucleotides LU632_RS20855: pepA - leucyl aminopeptidase, at 3,981,410 to 3,982,921 pepA LU632_RS20860: LU632_RS20860 - DNA polymerase III subunit chi, at 3,982,925 to 3,983,380 _RS20860 LU632_RS20865: LU632_RS20865 - valine--tRNA ligase, at 3,983,386 to 3,986,241 _RS20865 LU632_RS20870: LU632_RS20870 - IS481 family transposase, at 3,986,314 to 3,987,354 _RS20870 Position (kb) 3983 3984 3985 3986 3987Strain fitness (log2 ratio) -1 0 1at 3982.485 kb on + strand, within pepAat 3982.790 kb on + strandat 3982.792 kb on + strandat 3982.792 kb on + strandat 3982.792 kb on + strandat 3986.239 kb on + strandat 3986.239 kb on + strandat 3986.240 kb on - strandat 3986.240 kb on - strandat 3986.253 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2
remove
3,982,485 + pepA LU632_RS20855 0.71 -0.1
3,982,790 + +0.5
3,982,792 + +0.5
3,982,792 + +1.5
3,982,792 + +1.6
3,986,239 + +1.6
3,986,239 + +0.2
3,986,240 - -0.6
3,986,240 - -0.6
3,986,253 - +0.4

Or see this region's nucleotide sequence