Experiment: plant=Melon; plant sample=M4; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ftsP and LU632_RS20575 are separated by 91 nucleotides LU632_RS20575 and parC are separated by 87 nucleotides
LU632_RS20570: ftsP - cell division protein FtsP, at 3,916,398 to 3,917,813
ftsP
LU632_RS20575: LU632_RS20575 - 1-acylglycerol-3-phosphate O-acyltransferase, at 3,917,905 to 3,918,642
_RS20575
LU632_RS20580: parC - DNA topoisomerase IV subunit A, at 3,918,730 to 3,921,003
parC
Position (kb) 3917
3918
3919 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 3917.032 kb on + strand, within ftsP at 3917.184 kb on - strand, within ftsP at 3917.259 kb on - strand, within ftsP at 3917.309 kb on + strand, within ftsP at 3917.313 kb on + strand, within ftsP at 3917.353 kb on + strand, within ftsP at 3917.353 kb on + strand, within ftsP at 3917.353 kb on + strand, within ftsP at 3917.353 kb on + strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.354 kb on - strand, within ftsP at 3917.355 kb on + strand, within ftsP at 3917.355 kb on + strand, within ftsP at 3917.355 kb on + strand, within ftsP at 3917.355 kb on + strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.356 kb on - strand, within ftsP at 3917.357 kb on + strand, within ftsP at 3917.357 kb on + strand, within ftsP at 3917.357 kb on + strand, within ftsP at 3917.357 kb on + strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.358 kb on - strand, within ftsP at 3917.542 kb on + strand, within ftsP at 3917.543 kb on - strand, within ftsP at 3917.543 kb on - strand, within ftsP at 3917.543 kb on - strand, within ftsP at 3917.552 kb on + strand, within ftsP at 3917.593 kb on + strand, within ftsP at 3917.593 kb on + strand, within ftsP at 3917.594 kb on - strand, within ftsP at 3917.713 kb on - strand at 3917.813 kb on + strand at 3917.866 kb on - strand at 3917.873 kb on + strand at 3917.873 kb on + strand at 3917.889 kb on + strand at 3917.889 kb on + strand at 3918.686 kb on + strand at 3918.687 kb on - strand at 3918.713 kb on - strand at 3918.768 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2 remove 3,917,032 + ftsP LU632_RS20570 0.45 -0.6 3,917,184 - ftsP LU632_RS20570 0.56 +0.5 3,917,259 - ftsP LU632_RS20570 0.61 -0.8 3,917,309 + ftsP LU632_RS20570 0.64 +0.8 3,917,313 + ftsP LU632_RS20570 0.65 -2.4 3,917,353 + ftsP LU632_RS20570 0.67 -0.6 3,917,353 + ftsP LU632_RS20570 0.67 +1.1 3,917,353 + ftsP LU632_RS20570 0.67 +0.9 3,917,353 + ftsP LU632_RS20570 0.67 -0.5 3,917,354 - ftsP LU632_RS20570 0.68 -0.7 3,917,354 - ftsP LU632_RS20570 0.68 -0.6 3,917,354 - ftsP LU632_RS20570 0.68 -2.0 3,917,354 - ftsP LU632_RS20570 0.68 +0.4 3,917,354 - ftsP LU632_RS20570 0.68 +0.8 3,917,354 - ftsP LU632_RS20570 0.68 +0.5 3,917,354 - ftsP LU632_RS20570 0.68 -0.8 3,917,354 - ftsP LU632_RS20570 0.68 +0.9 3,917,355 + ftsP LU632_RS20570 0.68 -0.9 3,917,355 + ftsP LU632_RS20570 0.68 +0.8 3,917,355 + ftsP LU632_RS20570 0.68 -0.9 3,917,355 + ftsP LU632_RS20570 0.68 -1.0 3,917,356 - ftsP LU632_RS20570 0.68 -1.1 3,917,356 - ftsP LU632_RS20570 0.68 -0.8 3,917,356 - ftsP LU632_RS20570 0.68 -0.8 3,917,356 - ftsP LU632_RS20570 0.68 -2.2 3,917,356 - ftsP LU632_RS20570 0.68 -0.7 3,917,356 - ftsP LU632_RS20570 0.68 +0.6 3,917,356 - ftsP LU632_RS20570 0.68 -0.0 3,917,356 - ftsP LU632_RS20570 0.68 +0.3 3,917,356 - ftsP LU632_RS20570 0.68 -0.9 3,917,357 + ftsP LU632_RS20570 0.68 -0.6 3,917,357 + ftsP LU632_RS20570 0.68 +0.4 3,917,357 + ftsP LU632_RS20570 0.68 +0.8 3,917,357 + ftsP LU632_RS20570 0.68 -0.3 3,917,358 - ftsP LU632_RS20570 0.68 -1.7 3,917,358 - ftsP LU632_RS20570 0.68 +0.0 3,917,358 - ftsP LU632_RS20570 0.68 -1.5 3,917,358 - ftsP LU632_RS20570 0.68 +0.5 3,917,358 - ftsP LU632_RS20570 0.68 -0.1 3,917,358 - ftsP LU632_RS20570 0.68 -0.2 3,917,358 - ftsP LU632_RS20570 0.68 -0.3 3,917,358 - ftsP LU632_RS20570 0.68 +0.1 3,917,358 - ftsP LU632_RS20570 0.68 -0.9 3,917,542 + ftsP LU632_RS20570 0.81 -2.3 3,917,543 - ftsP LU632_RS20570 0.81 +1.5 3,917,543 - ftsP LU632_RS20570 0.81 -1.0 3,917,543 - ftsP LU632_RS20570 0.81 -2.1 3,917,552 + ftsP LU632_RS20570 0.81 -1.2 3,917,593 + ftsP LU632_RS20570 0.84 -1.8 3,917,593 + ftsP LU632_RS20570 0.84 +0.3 3,917,594 - ftsP LU632_RS20570 0.84 -1.1 3,917,713 - -1.6 3,917,813 + -0.5 3,917,866 - -1.9 3,917,873 + +0.4 3,917,873 + -0.5 3,917,889 + -1.4 3,917,889 + -0.5 3,918,686 + -0.6 3,918,687 - -1.3 3,918,713 - -0.6 3,918,768 + +3.8
Or see this region's nucleotide sequence