Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20060

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
3,817,939	-	fhuC	LU632_RS20055	0.22	-0.1
3,817,941	+	fhuC	LU632_RS20055	0.22	-0.7
3,817,941	+	fhuC	LU632_RS20055	0.22	-0.5
3,817,942	-	fhuC	LU632_RS20055	0.22	-1.0
3,817,942	-	fhuC	LU632_RS20055	0.22	-0.9
3,817,942	-	fhuC	LU632_RS20055	0.22	-1.9
3,817,955	-	fhuC	LU632_RS20055	0.24	+0.9
3,818,235	-	fhuC	LU632_RS20055	0.59	-0.4
3,818,301	-	fhuC	LU632_RS20055	0.67	-1.0
3,818,549	+				+1.2
3,818,605	+				+0.8
3,818,606	-				+0.2
3,818,606	-				-0.9
3,818,608	-				-0.8
3,818,677	+				-0.0
3,818,681	+				+0.8
3,818,821	-				+0.3
3,818,867	-				+1.5
3,818,902	-				+0.8
3,818,927	+				-1.0
3,818,940	+				-0.6
3,818,940	+				+1.7
3,818,940	+				-0.2
3,818,940	+				+0.2
3,818,940	+				-1.8
3,818,940	+				-0.7
3,818,941	-				-0.1
3,818,941	-				-0.6
3,819,045	+				-0.8
3,819,046	-				-2.0
3,819,198	-	mrcB	LU632_RS20060	0.11	-1.5
3,819,411	-	mrcB	LU632_RS20060	0.20	+1.8
3,819,493	+	mrcB	LU632_RS20060	0.23	+1.1
3,819,494	-	mrcB	LU632_RS20060	0.23	+0.9
3,819,494	-	mrcB	LU632_RS20060	0.23	-0.6
3,819,691	+	mrcB	LU632_RS20060	0.31	-1.2
3,819,700	+	mrcB	LU632_RS20060	0.31	-0.1
3,819,701	-	mrcB	LU632_RS20060	0.31	+1.6
3,819,701	-	mrcB	LU632_RS20060	0.31	-1.7
3,819,828	+	mrcB	LU632_RS20060	0.36	+0.4
3,819,829	-	mrcB	LU632_RS20060	0.36	-1.0
3,819,869	+	mrcB	LU632_RS20060	0.38	-0.9
3,819,870	-	mrcB	LU632_RS20060	0.38	+0.6
3,820,032	+	mrcB	LU632_RS20060	0.45	+0.1
3,820,032	+	mrcB	LU632_RS20060	0.45	-0.1
3,820,033	-	mrcB	LU632_RS20060	0.45	+0.2
3,820,247	+	mrcB	LU632_RS20060	0.53	-1.7
3,820,247	+	mrcB	LU632_RS20060	0.53	-3.0
3,820,341	-	mrcB	LU632_RS20060	0.57	+0.6
3,820,341	-	mrcB	LU632_RS20060	0.57	-0.8
3,820,393	+	mrcB	LU632_RS20060	0.59	-0.2
3,820,393	+	mrcB	LU632_RS20060	0.59	+0.9
3,820,393	+	mrcB	LU632_RS20060	0.59	-0.2
3,820,393	+	mrcB	LU632_RS20060	0.59	-0.5
3,820,418	+	mrcB	LU632_RS20060	0.60	-0.1
3,820,419	-	mrcB	LU632_RS20060	0.60	-0.4
3,820,421	+	mrcB	LU632_RS20060	0.60	+0.6
3,820,475	+	mrcB	LU632_RS20060	0.62	+2.8
3,820,475	+	mrcB	LU632_RS20060	0.62	-2.0
3,820,490	+	mrcB	LU632_RS20060	0.63	-0.1
3,820,490	+	mrcB	LU632_RS20060	0.63	-1.0
3,820,490	+	mrcB	LU632_RS20060	0.63	-0.8
3,820,542	+	mrcB	LU632_RS20060	0.65	-0.6
3,820,542	+	mrcB	LU632_RS20060	0.65	-0.1
3,820,544	+	mrcB	LU632_RS20060	0.65	-1.2
3,820,544	+	mrcB	LU632_RS20060	0.65	-0.4
3,820,544	+	mrcB	LU632_RS20060	0.65	+0.8
3,820,545	+	mrcB	LU632_RS20060	0.65	-0.6
3,820,545	-	mrcB	LU632_RS20060	0.65	+1.1
3,820,545	-	mrcB	LU632_RS20060	0.65	+0.2
3,820,545	-	mrcB	LU632_RS20060	0.65	-1.7
3,820,554	+	mrcB	LU632_RS20060	0.66	+0.2
3,820,706	+	mrcB	LU632_RS20060	0.72	-0.6
3,820,809	+	mrcB	LU632_RS20060	0.76	+0.2
3,820,810	-	mrcB	LU632_RS20060	0.76	+1.2
3,820,810	-	mrcB	LU632_RS20060	0.76	+0.1
3,820,965	+	mrcB	LU632_RS20060	0.82	+0.6
3,820,965	+	mrcB	LU632_RS20060	0.82	-0.4
3,820,966	-	mrcB	LU632_RS20060	0.82	+1.5
3,820,966	-	mrcB	LU632_RS20060	0.82	-0.4
3,821,021	+	mrcB	LU632_RS20060	0.84	-0.2
3,821,099	+	mrcB	LU632_RS20060	0.87	-0.4
3,821,100	-	mrcB	LU632_RS20060	0.88	-0.7
3,821,101	+	mrcB	LU632_RS20060	0.88	-1.0
3,821,101	+	mrcB	LU632_RS20060	0.88	+0.4
3,821,101	+	mrcB	LU632_RS20060	0.88	-0.4
3,821,102	-	mrcB	LU632_RS20060	0.88	+0.6
3,821,102	-	mrcB	LU632_RS20060	0.88	-1.5
3,821,102	-	mrcB	LU632_RS20060	0.88	+2.2
3,821,102	-	mrcB	LU632_RS20060	0.88	-0.9
3,821,190	+				+0.4
3,821,215	+				-0.6
3,821,881	-	hrpB	LU632_RS20065	0.15	+1.6
3,821,911	-	hrpB	LU632_RS20065	0.17	-1.0
3,821,911	-	hrpB	LU632_RS20065	0.17	+1.0
3,821,973	+	hrpB	LU632_RS20065	0.19	+1.8
3,821,974	-	hrpB	LU632_RS20065	0.19	+1.6
3,822,300	+	hrpB	LU632_RS20065	0.33	+0.4
3,822,302	+	hrpB	LU632_RS20065	0.33	+1.3
3,822,302	+	hrpB	LU632_RS20065	0.33	+0.6
3,822,302	+	hrpB	LU632_RS20065	0.33	+0.2
3,822,303	-	hrpB	LU632_RS20065	0.33	-1.0
3,822,303	-	hrpB	LU632_RS20065	0.33	-0.6
3,822,333	+	hrpB	LU632_RS20065	0.34	-0.1
3,822,359	-	hrpB	LU632_RS20065	0.35	-0.5