Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20055

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
3,817,277	-	fhuD	LU632_RS20050	0.46	-1.1
3,817,343	+	fhuD	LU632_RS20050	0.53	+1.8
3,817,344	-	fhuD	LU632_RS20050	0.54	-2.0
3,817,429	+	fhuD	LU632_RS20050	0.63	-0.4
3,817,502	-	fhuD	LU632_RS20050	0.71	-0.8
3,817,502	-	fhuD	LU632_RS20050	0.71	-0.3
3,817,743	+				+0.2
3,817,744	-				+2.2
3,817,744	-				-1.2
3,817,791	+				+2.6
3,817,791	+				-0.3
3,817,833	-				-1.2
3,817,939	-	fhuC	LU632_RS20055	0.22	-0.1
3,817,941	+	fhuC	LU632_RS20055	0.22	-0.7
3,817,941	+	fhuC	LU632_RS20055	0.22	-0.5
3,817,942	-	fhuC	LU632_RS20055	0.22	-1.0
3,817,942	-	fhuC	LU632_RS20055	0.22	-0.9
3,817,942	-	fhuC	LU632_RS20055	0.22	-1.9
3,817,955	-	fhuC	LU632_RS20055	0.24	+0.9
3,818,235	-	fhuC	LU632_RS20055	0.59	-0.4
3,818,301	-	fhuC	LU632_RS20055	0.67	-1.0
3,818,549	+				+1.2
3,818,605	+				+0.8
3,818,606	-				+0.2
3,818,606	-				-0.9
3,818,608	-				-0.8
3,818,677	+				-0.0
3,818,681	+				+0.8
3,818,821	-				+0.3
3,818,867	-				+1.5
3,818,902	-				+0.8
3,818,927	+				-1.0
3,818,940	+				-0.6
3,818,940	+				+1.7
3,818,940	+				-0.2
3,818,940	+				+0.2
3,818,940	+				-1.8
3,818,940	+				-0.7
3,818,941	-				-0.1
3,818,941	-				-0.6
3,819,045	+				-0.8
3,819,046	-				-2.0
3,819,198	-	mrcB	LU632_RS20060	0.11	-1.5
3,819,411	-	mrcB	LU632_RS20060	0.20	+1.8
3,819,493	+	mrcB	LU632_RS20060	0.23	+1.1
3,819,494	-	mrcB	LU632_RS20060	0.23	+0.9
3,819,494	-	mrcB	LU632_RS20060	0.23	-0.6