Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19860

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
3,773,197	-	arfB	LU632_RS19850	0.49	+0.8
3,773,316	+	arfB	LU632_RS19850	0.78	-0.2
3,773,320	-	arfB	LU632_RS19850	0.79	+2.0
3,773,445	+				+1.9
3,773,459	+				+0.0
3,773,597	+		LU632_RS19855	0.34	-2.0
3,773,598	-		LU632_RS19855	0.35	-1.1
3,773,598	-		LU632_RS19855	0.35	-0.6
3,773,640	-		LU632_RS19855	0.42	+0.2
3,773,641	+		LU632_RS19855	0.42	+1.2
3,773,647	+		LU632_RS19855	0.43	-0.4
3,773,647	+		LU632_RS19855	0.43	-0.2
3,773,647	+		LU632_RS19855	0.43	-1.0
3,773,647	+		LU632_RS19855	0.43	+0.2
3,773,648	-		LU632_RS19855	0.44	+0.1
3,773,648	-		LU632_RS19855	0.44	+1.2
3,773,648	-		LU632_RS19855	0.44	-1.1
3,773,648	-		LU632_RS19855	0.44	-0.3
3,773,649	+		LU632_RS19855	0.44	+1.0
3,773,649	+		LU632_RS19855	0.44	-0.4
3,773,649	+		LU632_RS19855	0.44	+0.7
3,773,650	-		LU632_RS19855	0.44	-0.3
3,773,650	-		LU632_RS19855	0.44	+0.5
3,773,793	+		LU632_RS19855	0.70	-1.1
3,773,793	+		LU632_RS19855	0.70	+0.2
3,773,794	-		LU632_RS19855	0.70	-0.6
3,773,925	-				-0.8
3,773,936	+				-1.7
3,773,937	-				-0.5
3,773,937	-				-0.4
3,773,937	-				-1.2
3,773,937	-				+0.9
3,773,938	+				+1.3
3,773,939	-				-0.5
3,773,940	+				+0.4
3,773,941	-				-1.1
3,773,973	-				-0.1
3,773,986	+				-0.5
3,774,053	-				+1.7
3,774,153	+		LU632_RS19860	0.31	-1.0
3,774,217	+		LU632_RS19860	0.63	-1.9
3,774,217	+		LU632_RS19860	0.63	-3.1
3,774,218	-		LU632_RS19860	0.64	+1.6
3,774,218	-		LU632_RS19860	0.64	-0.3
3,774,228	-		LU632_RS19860	0.69	-0.1
3,774,276	+				-0.2
3,774,276	+				-1.1
3,774,277	-				+0.2
3,774,277	-				-0.6
3,774,319	+	rof	LU632_RS19865	0.16	-2.7
3,774,471	-	rof	LU632_RS19865	0.73	+0.7
3,774,509	+	rof	LU632_RS19865	0.88	+0.6
3,774,510	-	rof	LU632_RS19865	0.88	-0.6
3,774,513	+	rof	LU632_RS19865	0.89	-0.2
3,774,687	-				-0.1