Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19435

Experiment: plant=Melon; plant sample=M4; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS19430 and LU632_RS19435 overlap by 82 nucleotidesLU632_RS19435 and LU632_RS19440 are separated by 314 nucleotides LU632_RS19430: LU632_RS19430 - IS1 family transposase, at 3,680,077 to 3,680,580 _RS19430 LU632_RS19435: LU632_RS19435 - transposase, at 3,680,499 to 3,680,774 _RS19435 LU632_RS19440: LU632_RS19440 - IS5 family transposase, at 3,681,089 to 3,681,866 _RS19440 Position (kb) 3680 3681Strain fitness (log2 ratio) -1 0 1 2at 3680.047 kb on - strandat 3680.061 kb on - strandat 3680.799 kb on + strandat 3680.937 kb on - strandat 3680.950 kb on - strandat 3680.951 kb on + strandat 3680.951 kb on + strandat 3680.952 kb on - strandat 3680.952 kb on - strandat 3680.953 kb on + strandat 3680.954 kb on - strandat 3680.954 kb on - strandat 3681.009 kb on - strandat 3681.056 kb on - strandat 3681.056 kb on - strandat 3681.058 kb on - strandat 3681.276 kb on + strand, within LU632_RS19440

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2
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3,680,047 - +0.6
3,680,061 - +0.6
3,680,799 + -0.6
3,680,937 - +0.6
3,680,950 - +1.0
3,680,951 + -0.3
3,680,951 + -0.3
3,680,952 - -0.1
3,680,952 - +0.6
3,680,953 + +0.5
3,680,954 - +1.8
3,680,954 - +0.2
3,681,009 - +0.2
3,681,056 - +0.4
3,681,056 - -0.2
3,681,058 - +1.2
3,681,276 + LU632_RS19440 0.24 -0.7

Or see this region's nucleotide sequence