Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17575

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
3,300,168	+		LU632_RS17570	0.11	-0.5
3,300,232	+		LU632_RS17570	0.17	-0.8
3,300,233	-		LU632_RS17570	0.17	+0.5
3,300,369	-		LU632_RS17570	0.30	-1.0
3,300,478	+		LU632_RS17570	0.40	-0.4
3,300,478	+		LU632_RS17570	0.40	-0.0
3,300,519	+		LU632_RS17570	0.43	-0.4
3,300,541	+		LU632_RS17570	0.45	+0.5
3,300,542	-		LU632_RS17570	0.45	-0.8
3,300,542	-		LU632_RS17570	0.45	-1.0
3,300,562	+		LU632_RS17570	0.47	+1.4
3,300,615	+		LU632_RS17570	0.52	+2.1
3,300,816	-		LU632_RS17570	0.71	+0.1
3,300,859	-		LU632_RS17570	0.74	+0.8
3,300,874	-		LU632_RS17570	0.76	-1.2
3,300,961	-		LU632_RS17570	0.84	-0.2
3,301,043	+				-0.3
3,301,045	+				-1.0
3,301,046	-				-0.3
3,301,046	-				+0.2
3,301,046	-				+1.0
3,301,088	-				-0.2
3,301,090	+				-0.2
3,301,090	+				-2.6
3,301,090	+				+1.1
3,301,090	+				-0.2
3,301,091	-				+0.0
3,301,094	+				-0.7
3,301,094	+				-0.9
3,301,094	+				+0.3
3,301,095	-				-1.4
3,301,096	+				-2.0
3,301,218	-				-0.0
3,301,244	+		LU632_RS17575	0.11	+1.5
3,301,276	+		LU632_RS17575	0.14	-1.3
3,301,277	-		LU632_RS17575	0.14	-0.2
3,301,306	-		LU632_RS17575	0.17	-0.3
3,301,308	+		LU632_RS17575	0.17	+0.1
3,301,309	-		LU632_RS17575	0.17	+1.7
3,301,309	-		LU632_RS17575	0.17	-0.3
3,301,313	-		LU632_RS17575	0.18	-0.9
3,301,384	-		LU632_RS17575	0.24	+0.5
3,301,384	-		LU632_RS17575	0.24	-2.3
3,301,384	-		LU632_RS17575	0.24	+0.1
3,301,440	+		LU632_RS17575	0.30	-0.2
3,301,441	-		LU632_RS17575	0.30	-0.5
3,301,446	+		LU632_RS17575	0.31	-0.3
3,301,447	-		LU632_RS17575	0.31	-1.1
3,301,549	-		LU632_RS17575	0.41	+0.1
3,301,549	-		LU632_RS17575	0.41	-0.8
3,301,826	-		LU632_RS17575	0.68	-1.0
3,301,870	-		LU632_RS17575	0.72	-0.6
3,301,915	+		LU632_RS17575	0.77	-0.3
3,301,941	+		LU632_RS17575	0.79	-1.5
3,301,942	-		LU632_RS17575	0.79	-1.0
3,301,942	-		LU632_RS17575	0.79	-1.3
3,301,945	-		LU632_RS17575	0.80	-1.5
3,301,945	-		LU632_RS17575	0.80	-0.6
3,301,947	+		LU632_RS17575	0.80	-1.8
3,301,947	+		LU632_RS17575	0.80	+0.7
3,301,948	-		LU632_RS17575	0.80	-1.6
3,301,948	-		LU632_RS17575	0.80	-0.2
3,301,948	-		LU632_RS17575	0.80	+0.4
3,302,013	-		LU632_RS17575	0.86	+0.2
3,302,013	-		LU632_RS17575	0.86	+1.4
3,302,013	-		LU632_RS17575	0.86	+0.3
3,302,013	-		LU632_RS17575	0.86	-1.1
3,302,019	-		LU632_RS17575	0.87	+1.9
3,302,032	-		LU632_RS17575	0.88	-0.3
3,302,076	-				+2.1
3,302,144	+				-1.2
3,302,144	+				+0.4
3,302,145	-				+0.5
3,302,145	-				-1.1
3,302,145	-				-2.0
3,302,146	+				-1.0
3,302,146	+				-0.1
3,302,146	+				+0.2
3,302,147	-				+1.1
3,302,147	-				-0.2
3,302,147	-				+2.4
3,302,147	-				-0.3
3,302,215	+				-0.1
3,302,396	+	yejF	LU632_RS17580	0.15	+1.8
3,302,396	+	yejF	LU632_RS17580	0.15	-0.1
3,302,396	+	yejF	LU632_RS17580	0.15	+0.8
3,302,424	-	yejF	LU632_RS17580	0.17	-1.4
3,302,459	+	yejF	LU632_RS17580	0.19	-0.7
3,302,697	-	yejF	LU632_RS17580	0.34	-0.2
3,302,765	+	yejF	LU632_RS17580	0.39	-0.2
3,302,819	+	yejF	LU632_RS17580	0.42	-0.9
3,302,820	-	yejF	LU632_RS17580	0.42	-2.1
3,302,898	+	yejF	LU632_RS17580	0.47	+0.3
3,302,899	-	yejF	LU632_RS17580	0.47	-0.7
3,302,995	-	yejF	LU632_RS17580	0.53	-0.5
3,303,098	-	yejF	LU632_RS17580	0.60	-0.6
3,303,149	-	yejF	LU632_RS17580	0.63	-1.1