Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17315

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
3,253,192	-				+0.4
3,253,201	-				+1.0
3,253,282	+		LU632_RS17310	0.33	-0.9
3,253,282	+		LU632_RS17310	0.33	-1.7
3,253,282	+		LU632_RS17310	0.33	-0.6
3,253,282	+		LU632_RS17310	0.33	-1.0
3,253,282	+		LU632_RS17310	0.33	+0.6
3,253,283	-		LU632_RS17310	0.34	-0.7
3,253,283	-		LU632_RS17310	0.34	+0.4
3,253,283	-		LU632_RS17310	0.34	+0.6
3,253,283	-		LU632_RS17310	0.34	+1.1
3,253,283	-		LU632_RS17310	0.34	+0.9
3,253,283	-		LU632_RS17310	0.34	-0.8
3,253,283	-		LU632_RS17310	0.34	-0.8
3,253,283	-		LU632_RS17310	0.34	+1.0
3,253,344	+		LU632_RS17310	0.53	-1.4
3,253,373	-		LU632_RS17310	0.62	-0.1
3,253,407	+		LU632_RS17310	0.73	-1.1
3,253,446	-		LU632_RS17310	0.85	+0.3
3,253,495	+				+0.6
3,253,495	+				+0.0
3,253,495	+				+0.3
3,253,496	-				+0.5
3,253,610	+				-0.5
3,253,610	+				-0.4
3,253,610	+				-0.2
3,253,618	-				+0.5
3,253,656	-				+0.7
3,253,795	+				-0.5
3,253,795	+				+0.7
3,253,796	-				+3.6
3,253,796	-				-1.1
3,253,796	-				-0.6
3,253,796	-				-1.8
3,253,803	+				+4.9
3,253,803	+				-1.2
3,253,803	+				-0.6
3,253,849	+				-0.7
3,253,898	+				+1.2
3,253,899	-				+0.1
3,253,899	-				+0.6
3,253,899	-				-0.2
3,253,960	-				-2.4
3,253,979	+				+0.5
3,254,020	-				-0.4
3,254,027	+				-1.5
3,254,028	-				+0.1
3,254,111	+				-0.4
3,254,111	+				-1.2
3,254,112	-				-0.7
3,254,112	-				-2.6
3,254,116	+				+0.5
3,254,116	+				+2.1
3,254,250	-				+1.1
3,254,326	+				+1.1
3,254,367	+	fruA	LU632_RS17315	0.12	+0.5
3,254,478	+	fruA	LU632_RS17315	0.19	-0.3
3,254,568	-	fruA	LU632_RS17315	0.24	-1.4
3,254,568	-	fruA	LU632_RS17315	0.24	-1.6
3,254,568	-	fruA	LU632_RS17315	0.24	-0.2
3,254,568	-	fruA	LU632_RS17315	0.24	+0.1
3,254,613	+	fruA	LU632_RS17315	0.27	-0.2
3,254,637	+	fruA	LU632_RS17315	0.28	-1.0
3,254,638	-	fruA	LU632_RS17315	0.28	-1.5
3,254,750	+	fruA	LU632_RS17315	0.35	+0.4
3,254,750	+	fruA	LU632_RS17315	0.35	-1.1
3,254,751	-	fruA	LU632_RS17315	0.35	+0.5
3,254,751	-	fruA	LU632_RS17315	0.35	-0.2
3,254,751	-	fruA	LU632_RS17315	0.35	-2.6
3,254,794	-	fruA	LU632_RS17315	0.37	-0.7
3,254,802	+	fruA	LU632_RS17315	0.38	-0.9
3,254,802	+	fruA	LU632_RS17315	0.38	-0.0
3,254,820	+	fruA	LU632_RS17315	0.39	-1.5
3,254,821	-	fruA	LU632_RS17315	0.39	-1.1
3,254,821	-	fruA	LU632_RS17315	0.39	-1.2
3,255,070	-	fruA	LU632_RS17315	0.53	-0.7
3,255,070	-	fruA	LU632_RS17315	0.53	-0.0
3,255,140	+	fruA	LU632_RS17315	0.58	-0.5
3,255,140	+	fruA	LU632_RS17315	0.58	-0.2
3,255,141	-	fruA	LU632_RS17315	0.58	-0.4
3,255,141	-	fruA	LU632_RS17315	0.58	+2.1
3,255,213	+	fruA	LU632_RS17315	0.62	-1.8
3,255,297	+	fruA	LU632_RS17315	0.67	+0.6
3,255,308	+	fruA	LU632_RS17315	0.67	+0.2
3,255,308	+	fruA	LU632_RS17315	0.67	-0.1
3,255,319	-	fruA	LU632_RS17315	0.68	-1.4
3,255,348	+	fruA	LU632_RS17315	0.70	-2.5
3,255,348	+	fruA	LU632_RS17315	0.70	-2.3
3,255,349	-	fruA	LU632_RS17315	0.70	-2.0
3,255,364	-	fruA	LU632_RS17315	0.71	+1.0
3,255,496	-	fruA	LU632_RS17315	0.78	-0.6
3,255,496	-	fruA	LU632_RS17315	0.78	+0.4
3,255,496	-	fruA	LU632_RS17315	0.78	-0.4
3,255,652	+	fruA	LU632_RS17315	0.88	+2.8
3,255,653	-	fruA	LU632_RS17315	0.88	-1.1
3,255,653	-	fruA	LU632_RS17315	0.88	-0.7
3,255,706	-				-2.0
3,255,711	+				+3.7
3,255,711	+				+2.7
3,255,711	+				-0.5
3,255,712	-				+0.1
3,255,799	-				-0.2
3,255,844	+				-0.6
3,255,845	-				-1.6
3,255,862	+				+0.5
3,255,862	+				+1.7
3,255,863	-				-0.4
3,255,863	-				+1.7
3,255,882	+				+0.5
3,255,892	+				-3.4
3,255,892	+				-2.6
3,255,892	+				-0.9
3,256,028	+	fruK	LU632_RS17320	0.16	-2.8
3,256,201	+	fruK	LU632_RS17320	0.35	+0.1
3,256,201	+	fruK	LU632_RS17320	0.35	+1.5
3,256,202	-	fruK	LU632_RS17320	0.35	+1.1
3,256,323	+	fruK	LU632_RS17320	0.47	-2.4
3,256,324	-	fruK	LU632_RS17320	0.48	-1.6
3,256,548	+	fruK	LU632_RS17320	0.71	+1.5
3,256,549	-	fruK	LU632_RS17320	0.72	+0.5