Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17285

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
3,246,212	+	fghA	LU632_RS17275	0.89	-0.6
3,246,213	-	fghA	LU632_RS17275	0.89	+0.1
3,246,213	-	fghA	LU632_RS17275	0.89	+1.1
3,246,213	-	fghA	LU632_RS17275	0.89	-1.4
3,246,213	-	fghA	LU632_RS17275	0.89	-0.3
3,246,242	-				+0.5
3,246,435	-		LU632_RS17280	0.11	+0.6
3,246,514	+		LU632_RS17280	0.21	-1.1
3,246,514	+		LU632_RS17280	0.21	+0.3
3,246,514	+		LU632_RS17280	0.21	-0.8
3,246,514	+		LU632_RS17280	0.21	+1.7
3,246,515	-		LU632_RS17280	0.21	-1.4
3,246,515	-		LU632_RS17280	0.21	-0.4
3,246,516	+		LU632_RS17280	0.21	+1.1
3,246,516	+		LU632_RS17280	0.21	+0.2
3,246,517	-		LU632_RS17280	0.21	-0.2
3,246,517	-		LU632_RS17280	0.21	-0.5
3,246,517	-		LU632_RS17280	0.21	+2.1
3,246,540	+		LU632_RS17280	0.24	-0.6
3,246,573	+		LU632_RS17280	0.28	+1.2
3,247,161	-				+0.9
3,247,161	-				+0.5
3,247,164	-				+1.2
3,247,298	-		LU632_RS17285	0.15	-0.6
3,247,437	+		LU632_RS17285	0.28	-1.2
3,247,437	+		LU632_RS17285	0.28	+1.1
3,247,437	+		LU632_RS17285	0.28	-0.7
3,247,438	-		LU632_RS17285	0.28	+1.1
3,247,438	-		LU632_RS17285	0.28	-0.5
3,247,443	+		LU632_RS17285	0.29	-0.2
3,247,527	+		LU632_RS17285	0.36	-1.2
3,247,738	-		LU632_RS17285	0.56	+2.1
3,247,810	-		LU632_RS17285	0.62	-0.1
3,247,810	-		LU632_RS17285	0.62	+0.3
3,247,868	+		LU632_RS17285	0.68	+0.1
3,247,898	+		LU632_RS17285	0.71	+0.5
3,248,115	+				+1.0
3,248,150	-				+1.5
3,248,237	+				+0.1
3,248,238	-				-0.4
3,248,255	-				-0.7
3,248,269	+				+0.2
3,248,270	-				+1.0
3,248,356	+				-1.1
3,248,356	+				-2.2
3,248,356	+				+1.3
3,248,356	+				-1.6
3,248,429	+				+0.0
3,248,430	-				+0.3
3,248,431	+				-3.2
3,248,469	+				-1.1
3,248,470	+				-0.7
3,248,471	-				-1.8
3,248,471	-				-2.3
3,248,498	+				-1.2
3,248,521	+		LU632_RS17290	0.11	+0.4
3,248,522	-		LU632_RS17290	0.11	-0.0
3,248,538	-		LU632_RS17290	0.12	+0.5
3,248,553	+		LU632_RS17290	0.13	-1.2
3,248,553	+		LU632_RS17290	0.13	-1.0
3,248,553	+		LU632_RS17290	0.13	+1.1
3,248,554	-		LU632_RS17290	0.13	-0.0
3,248,597	-		LU632_RS17290	0.16	+0.4
3,248,597	-		LU632_RS17290	0.16	-0.8
3,248,657	+		LU632_RS17290	0.20	+0.3
3,248,719	+		LU632_RS17290	0.24	-0.8
3,248,720	-		LU632_RS17290	0.25	-0.2
3,248,783	-		LU632_RS17290	0.29	+4.5
3,248,881	+		LU632_RS17290	0.35	+0.3
3,248,881	+		LU632_RS17290	0.35	-0.7
3,248,881	+		LU632_RS17290	0.35	-0.8
3,248,881	+		LU632_RS17290	0.35	+1.9
3,248,881	+		LU632_RS17290	0.35	-1.5
3,248,881	+		LU632_RS17290	0.35	-0.6
3,248,882	-		LU632_RS17290	0.36	+0.1
3,248,882	-		LU632_RS17290	0.36	-0.5
3,248,882	-		LU632_RS17290	0.36	+1.3
3,249,003	+		LU632_RS17290	0.44	-0.0
3,249,034	+		LU632_RS17290	0.46	-1.3
3,249,035	-		LU632_RS17290	0.46	+0.1
3,249,073	+		LU632_RS17290	0.48	+0.7
3,249,074	-		LU632_RS17290	0.49	-0.5
3,249,086	+		LU632_RS17290	0.49	+1.1