Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16940

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
3,193,632	+	clpB	LU632_RS16935	0.67	-1.4
3,193,656	+	clpB	LU632_RS16935	0.68	-0.6
3,193,657	-	clpB	LU632_RS16935	0.68	-0.4
3,193,725	-	clpB	LU632_RS16935	0.70	-1.6
3,193,728	+	clpB	LU632_RS16935	0.71	+0.5
3,193,728	+	clpB	LU632_RS16935	0.71	+1.1
3,193,729	-	clpB	LU632_RS16935	0.71	+0.4
3,193,807	-	clpB	LU632_RS16935	0.74	-2.6
3,193,864	-	clpB	LU632_RS16935	0.76	+0.4
3,193,915	+	clpB	LU632_RS16935	0.78	+0.6
3,193,985	+	clpB	LU632_RS16935	0.81	-0.3
3,194,197	+	clpB	LU632_RS16935	0.89	+3.9
3,194,198	-	clpB	LU632_RS16935	0.89	+0.3
3,194,198	-	clpB	LU632_RS16935	0.89	-1.2
3,194,203	-	clpB	LU632_RS16935	0.89	+0.1
3,194,233	+				+0.3
3,194,234	-				+1.1
3,194,234	-				-0.4
3,194,234	-				-0.9
3,194,234	-				-1.8
3,194,234	-				+1.0
3,194,289	+				-0.5
3,194,325	+				-0.7
3,194,325	+				-0.2
3,194,325	+				+0.2
3,194,329	+				+0.2
3,194,329	+				+0.7
3,194,330	-				+1.3
3,194,330	-				-0.6
3,194,373	+				+0.2
3,194,374	-				+1.5
3,194,374	-				-0.7
3,194,374	-				-1.0
3,194,457	+				+1.1
3,194,457	+				+0.5
3,194,457	+				+1.5
3,194,476	-				+1.1
3,194,543	-				-0.2
3,194,602	+				+0.1
3,194,603	-				+0.5
3,194,605	-				+1.0
3,194,762	-	pgeF	LU632_RS16940	0.22	+0.1
3,194,762	-	pgeF	LU632_RS16940	0.22	-1.0
3,194,764	+	pgeF	LU632_RS16940	0.22	+0.5
3,194,764	+	pgeF	LU632_RS16940	0.22	-1.1
3,194,764	+	pgeF	LU632_RS16940	0.22	+1.8
3,194,765	-	pgeF	LU632_RS16940	0.22	+0.4
3,194,765	-	pgeF	LU632_RS16940	0.22	-0.1
3,194,765	-	pgeF	LU632_RS16940	0.22	-2.0
3,194,864	+	pgeF	LU632_RS16940	0.36	-0.2
3,194,886	+	pgeF	LU632_RS16940	0.39	+1.5
3,194,886	+	pgeF	LU632_RS16940	0.39	+0.5
3,194,886	+	pgeF	LU632_RS16940	0.39	+0.1
3,194,887	-	pgeF	LU632_RS16940	0.39	+0.1
3,194,887	-	pgeF	LU632_RS16940	0.39	-1.8
3,194,887	-	pgeF	LU632_RS16940	0.39	-0.7
3,194,888	+	pgeF	LU632_RS16940	0.39	-0.4
3,194,889	-	pgeF	LU632_RS16940	0.40	-0.1
3,195,000	+	pgeF	LU632_RS16940	0.55	+2.4
3,195,000	+	pgeF	LU632_RS16940	0.55	-0.1
3,195,001	-	pgeF	LU632_RS16940	0.55	+0.3
3,195,028	-	pgeF	LU632_RS16940	0.59	-0.4
3,195,056	+	pgeF	LU632_RS16940	0.62	-0.3
3,195,058	+	pgeF	LU632_RS16940	0.63	+0.5
3,195,058	+	pgeF	LU632_RS16940	0.63	+0.5
3,195,058	+	pgeF	LU632_RS16940	0.63	-1.3
3,195,059	-	pgeF	LU632_RS16940	0.63	-0.5
3,195,108	+	pgeF	LU632_RS16940	0.70	-0.2
3,195,109	-	pgeF	LU632_RS16940	0.70	-0.4
3,195,109	-	pgeF	LU632_RS16940	0.70	-0.1
3,195,153	+	pgeF	LU632_RS16940	0.76	+1.4
3,195,175	+	pgeF	LU632_RS16940	0.79	+0.0
3,195,175	+	pgeF	LU632_RS16940	0.79	-0.6
3,195,176	-	pgeF	LU632_RS16940	0.79	-2.2
3,195,176	-	pgeF	LU632_RS16940	0.79	-1.3
3,195,231	+	pgeF	LU632_RS16940	0.86	-1.7
3,195,289	-				+0.1
3,195,349	+				-0.1
3,195,362	-				-0.9
3,195,439	+	rluD	LU632_RS16945	0.11	-0.5
3,195,447	+	rluD	LU632_RS16945	0.12	-0.5
3,195,448	-	rluD	LU632_RS16945	0.12	-1.0
3,195,448	-	rluD	LU632_RS16945	0.12	+0.7
3,195,448	-	rluD	LU632_RS16945	0.12	+1.1
3,195,449	+	rluD	LU632_RS16945	0.12	+0.1
3,195,450	-	rluD	LU632_RS16945	0.12	-0.6
3,195,450	-	rluD	LU632_RS16945	0.12	+0.5
3,195,600	-	rluD	LU632_RS16945	0.28	+1.1
3,195,600	-	rluD	LU632_RS16945	0.28	+0.5
3,195,600	-	rluD	LU632_RS16945	0.28	+0.1
3,195,698	-	rluD	LU632_RS16945	0.38	-1.6
3,195,704	+	rluD	LU632_RS16945	0.38	+0.5
3,195,724	+	rluD	LU632_RS16945	0.40	+0.5
3,195,725	-	rluD	LU632_RS16945	0.40	+0.5
3,195,871	+	rluD	LU632_RS16945	0.55	-1.2
3,195,871	+	rluD	LU632_RS16945	0.55	-0.7
3,195,871	+	rluD	LU632_RS16945	0.55	+2.1
3,195,905	+	rluD	LU632_RS16945	0.59	+0.1
3,195,908	-	rluD	LU632_RS16945	0.59	-1.3
3,195,920	+	rluD	LU632_RS16945	0.60	+0.8
3,195,940	-	rluD	LU632_RS16945	0.62	-1.7
3,195,940	-	rluD	LU632_RS16945	0.62	+2.9
3,195,963	-	rluD	LU632_RS16945	0.65	+1.1
3,195,963	-	rluD	LU632_RS16945	0.65	-0.2
3,195,995	+	rluD	LU632_RS16945	0.68	-0.1
3,196,021	+	rluD	LU632_RS16945	0.71	-1.3
3,196,022	-	rluD	LU632_RS16945	0.71	+0.5
3,196,083	-	rluD	LU632_RS16945	0.77	-2.5
3,196,083	-	rluD	LU632_RS16945	0.77	+0.1
3,196,199	+	rluD	LU632_RS16945	0.89	+0.1
3,196,202	-	rluD	LU632_RS16945	0.89	+0.5
3,196,202	-	rluD	LU632_RS16945	0.89	-1.3
3,196,292	+				-0.2
3,196,293	-				+0.2
3,196,307	-				-1.7