Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16875

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
3,178,940	+		LU632_RS16870	0.28	+0.8
3,178,940	+		LU632_RS16870	0.28	-0.0
3,178,940	+		LU632_RS16870	0.28	-0.2
3,178,941	-		LU632_RS16870	0.28	-0.7
3,178,941	-		LU632_RS16870	0.28	+2.7
3,178,941	-		LU632_RS16870	0.28	-0.3
3,178,941	-		LU632_RS16870	0.28	-0.7
3,178,941	-		LU632_RS16870	0.28	+0.8
3,179,012	+		LU632_RS16870	0.35	+1.4
3,179,047	+		LU632_RS16870	0.38	+3.4
3,179,140	+		LU632_RS16870	0.47	-0.1
3,179,140	+		LU632_RS16870	0.47	-0.7
3,179,229	+		LU632_RS16870	0.56	+0.5
3,179,258	+		LU632_RS16870	0.58	+0.8
3,179,358	+		LU632_RS16870	0.68	+0.8
3,179,460	+		LU632_RS16870	0.78	-1.3
3,179,640	+				+2.1
3,179,640	+				+0.1
3,179,640	+				-2.2
3,179,641	-				-0.1
3,179,641	-				+1.0
3,179,641	-				-1.7
3,179,641	-				+0.1
3,179,641	-				-0.9
3,179,665	+				+0.2
3,179,666	-				-1.1
3,179,742	+				-0.9
3,179,742	+				-1.2
3,179,742	+				+0.4
3,179,743	-				-1.8
3,179,743	-				+0.4
3,179,743	-				-0.3
3,179,759	+				+2.4
3,179,760	-				+0.6
3,179,763	+				+0.1
3,179,764	-				-0.2
3,179,780	-				+1.1
3,179,819	-				+0.8
3,179,825	+				-1.6
3,179,826	-				+4.1
3,179,829	-				+0.3
3,179,830	+				-1.2
3,179,830	+				+0.3
3,179,831	-				-0.4
3,179,831	-				+0.8
3,179,831	-				-0.9
3,179,831	-				+2.6
3,179,875	+				+1.1
3,179,875	+				+3.1
3,179,879	+				+0.3
3,179,879	+				-0.8
3,179,908	+				+1.1
3,179,929	+				-2.1
3,179,929	+				+0.6
3,179,929	+				-0.2
3,179,930	-				+0.8
3,179,930	-				+0.7
3,179,930	-				+0.7
3,179,930	-				+0.0
3,179,983	+	trxC	LU632_RS16875	0.13	+4.6
3,179,983	+	trxC	LU632_RS16875	0.13	-0.5
3,180,007	+	trxC	LU632_RS16875	0.18	-0.6
3,180,008	-	trxC	LU632_RS16875	0.19	-1.4
3,180,020	-	trxC	LU632_RS16875	0.21	+0.9
3,180,075	+	trxC	LU632_RS16875	0.35	-0.6
3,180,202	+	trxC	LU632_RS16875	0.65	-1.2
3,180,264	+	trxC	LU632_RS16875	0.80	-0.7
3,180,289	+	trxC	LU632_RS16875	0.85	-1.6
3,180,292	-	trxC	LU632_RS16875	0.86	+0.1
3,180,343	+				-0.5
3,180,391	+				-0.4
3,180,406	-				+1.1
3,180,408	+				+0.1
3,180,409	-				+0.5
3,180,409	-				+1.6
3,180,486	-		LU632_RS16880	0.27	+1.9