Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16505

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
3,125,926	-		LU632_RS16500	0.54	+1.2
3,125,926	-		LU632_RS16500	0.54	+1.0
3,126,207	-		LU632_RS16500	0.68	-0.1
3,126,301	+		LU632_RS16500	0.72	-0.4
3,126,368	+		LU632_RS16500	0.75	-0.2
3,126,368	+		LU632_RS16500	0.75	-0.3
3,126,375	-		LU632_RS16500	0.76	+0.0
3,126,418	+		LU632_RS16500	0.78	+1.5
3,126,468	-		LU632_RS16500	0.80	+0.1
3,126,610	+		LU632_RS16500	0.87	-1.1
3,126,611	-		LU632_RS16500	0.87	-0.8
3,126,611	-		LU632_RS16500	0.87	-0.3
3,126,686	+				+1.2
3,126,686	+				+0.7
3,126,687	-				-0.8
3,126,752	+				-0.3
3,126,753	-				-0.9
3,126,779	+				-0.7
3,126,780	-				-1.0
3,126,780	-				+0.0
3,126,780	-				+0.0
3,126,781	+				-0.2
3,126,781	+				-0.4
3,126,857	-				-2.0
3,126,857	-				+0.7
3,126,857	-				-0.6
3,126,857	-				-0.1
3,126,857	-				-0.6
3,126,895	+				+0.3
3,126,895	+				+1.2
3,126,896	-				+1.0
3,126,938	-				-1.0
3,126,948	+				+0.8
3,126,951	+				-0.2
3,126,952	-				+0.7
3,126,952	-				+0.6
3,127,120	+		LU632_RS16505	0.18	-1.9
3,127,121	-		LU632_RS16505	0.18	-1.4
3,127,266	+		LU632_RS16505	0.29	-1.0
3,127,452	+		LU632_RS16505	0.44	-0.5
3,127,453	-		LU632_RS16505	0.44	-0.7
3,127,453	-		LU632_RS16505	0.44	+0.1
3,127,466	-		LU632_RS16505	0.45	+3.4
3,127,503	-		LU632_RS16505	0.48	+2.5
3,127,670	+		LU632_RS16505	0.61	-0.3
3,127,670	+		LU632_RS16505	0.61	-2.5
3,127,671	-		LU632_RS16505	0.61	-0.8
3,128,111	+				+1.8
3,128,111	+				+0.9
3,128,229	-				-0.3
3,128,340	+				-0.5
3,128,402	+				+0.1
3,128,485	-				-0.6
3,128,488	+				+0.2
3,128,552	+				+2.0
3,128,585	+		LU632_RS16510	0.19	+0.0
3,128,585	+		LU632_RS16510	0.19	-2.1
3,128,677	-		LU632_RS16510	0.58	-0.3
3,128,710	-		LU632_RS16510	0.72	+0.0
3,128,790	-				+0.7
3,128,952	+				-0.5
3,129,150	-				+0.7