Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16150

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
3,052,167	+		LU632_RS16140	0.82	+0.9
3,052,381	+				+0.8
3,052,411	-	pxpB	LU632_RS16145	0.13	-1.4
3,052,532	-	pxpB	LU632_RS16145	0.32	+0.1
3,052,535	+	pxpB	LU632_RS16145	0.32	-1.3
3,052,535	+	pxpB	LU632_RS16145	0.32	+4.0
3,052,536	-	pxpB	LU632_RS16145	0.32	-0.7
3,052,536	-	pxpB	LU632_RS16145	0.32	+1.2
3,052,536	-	pxpB	LU632_RS16145	0.32	-1.2
3,052,536	-	pxpB	LU632_RS16145	0.32	+0.9
3,052,546	+	pxpB	LU632_RS16145	0.34	-1.3
3,052,547	-	pxpB	LU632_RS16145	0.34	-0.5
3,052,547	-	pxpB	LU632_RS16145	0.34	+0.1
3,052,547	-	pxpB	LU632_RS16145	0.34	+1.0
3,052,693	-	pxpB	LU632_RS16145	0.57	+0.7
3,052,976	-				+0.2
3,053,004	+				+0.3
3,053,004	+				-0.3
3,053,018	+				+0.9
3,053,018	+				-0.2
3,053,018	+				+1.8
3,053,019	-				-0.4
3,053,019	-				-0.6
3,053,019	-				-1.7
3,053,019	-				+1.0
3,053,019	-				+0.5
3,053,019	-				+1.2
3,053,019	-				-0.7
3,053,023	-				-2.0
3,053,039	-				-0.3
3,053,130	-				-0.3
3,053,334	+		LU632_RS16150	0.33	-0.3
3,053,447	-		LU632_RS16150	0.49	+0.5
3,053,447	-		LU632_RS16150	0.49	+2.0
3,053,482	+		LU632_RS16150	0.53	-1.6
3,053,605	+		LU632_RS16150	0.70	+1.0
3,053,605	+		LU632_RS16150	0.70	+0.8
3,053,647	+		LU632_RS16150	0.75	-0.6
3,054,068	-				-1.2
3,054,171	+	phrB	LU632_RS16155	0.16	+3.0
3,054,245	+	phrB	LU632_RS16155	0.21	+1.3
3,054,246	-	phrB	LU632_RS16155	0.21	+0.4
3,054,261	+	phrB	LU632_RS16155	0.22	-0.1
3,054,261	+	phrB	LU632_RS16155	0.22	+1.3
3,054,261	+	phrB	LU632_RS16155	0.22	+1.3
3,054,261	+	phrB	LU632_RS16155	0.22	+1.4
3,054,262	-	phrB	LU632_RS16155	0.22	+1.4
3,054,262	-	phrB	LU632_RS16155	0.22	-0.4
3,054,356	-	phrB	LU632_RS16155	0.29	+1.0
3,054,503	+	phrB	LU632_RS16155	0.39	-0.6
3,054,553	+	phrB	LU632_RS16155	0.43	+0.5
3,054,637	-	phrB	LU632_RS16155	0.49	+0.0