Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15835

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,993,695	+				+0.4
2,993,695	+				+1.1
2,993,696	-				-1.0
2,993,696	-				+0.3
2,993,696	-				-0.2
2,993,716	+				+1.4
2,993,716	+				+0.7
2,993,717	-				-0.0
2,993,717	-				-0.0
2,993,717	-				-0.5
2,993,791	+				+0.5
2,993,815	-				+1.1
2,993,844	+				-0.7
2,993,852	+				-1.5
2,993,865	+				+0.6
2,993,865	+				+0.2
2,994,032	+				+0.2
2,994,045	+				-0.1
2,994,045	+				+0.1
2,994,132	+				+0.6
2,994,132	+				+0.5
2,994,132	+				-0.5
2,994,133	-				+0.7
2,994,313	+				+0.4
2,994,313	+				-1.6
2,994,314	-				+0.2
2,994,314	-				+0.4
2,994,314	-				-1.6
2,994,314	-				-0.1
2,994,315	+				+0.9
2,994,315	+				-0.1
2,994,316	-				-1.0
2,994,316	-				+0.2
2,994,316	-				-0.3
2,994,408	-		LU632_RS15830	0.57	-0.0
2,994,442	+		LU632_RS15830	0.79	+3.4
2,994,476	-				+0.6
2,994,476	-				+0.5
2,994,500	-				-0.2
2,994,520	-				-1.7
2,994,531	+				+0.0
2,994,532	-				-0.4
2,994,549	+				-1.0
2,994,549	+				-1.0
2,994,627	+				-1.5
2,994,774	+				+1.0
2,994,800	+	sbcB	LU632_RS15835	0.12	-0.8
2,994,839	-	sbcB	LU632_RS15835	0.14	+0.8
2,994,839	-	sbcB	LU632_RS15835	0.14	-0.7
2,994,892	+	sbcB	LU632_RS15835	0.18	+0.0
2,994,937	+	sbcB	LU632_RS15835	0.21	+2.4
2,995,297	+	sbcB	LU632_RS15835	0.46	+2.0
2,995,325	-	sbcB	LU632_RS15835	0.48	-0.9
2,995,344	+	sbcB	LU632_RS15835	0.50	-2.2
2,995,344	+	sbcB	LU632_RS15835	0.50	-1.5
2,995,345	-	sbcB	LU632_RS15835	0.50	+0.9
2,995,397	-	sbcB	LU632_RS15835	0.53	-1.6
2,995,432	+	sbcB	LU632_RS15835	0.56	+1.0
2,995,639	-	sbcB	LU632_RS15835	0.70	+1.2
2,995,681	-	sbcB	LU632_RS15835	0.73	-0.0
2,995,714	+	sbcB	LU632_RS15835	0.76	-0.0
2,995,774	+	sbcB	LU632_RS15835	0.80	+6.3
2,995,775	-	sbcB	LU632_RS15835	0.80	+0.5
2,995,775	-	sbcB	LU632_RS15835	0.80	+0.4
2,995,870	+	sbcB	LU632_RS15835	0.86	+1.4
2,995,958	+				-2.1
2,995,991	+				-1.6
2,996,013	+				-1.3
2,996,013	+				-0.4
2,996,014	-				-0.3
2,996,031	+				+0.4
2,996,067	-				-0.7
2,996,219	-				-1.2
2,996,219	-				-0.5
2,996,219	-				+0.7
2,996,221	-				+0.8
2,996,221	-				-0.3
2,996,873	+				+1.5
2,996,873	+				+0.8