Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15700

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,971,715	-	gshA	LU632_RS15690	0.77	-0.6
2,972,122	-				+1.2
2,972,122	-				+3.4
2,972,122	-				-1.4
2,972,203	-		LU632_RS15695	0.10	-0.1
2,972,252	+		LU632_RS15695	0.22	+0.6
2,972,274	-		LU632_RS15695	0.27	-0.3
2,972,274	-		LU632_RS15695	0.27	-0.2
2,972,282	+		LU632_RS15695	0.29	-0.6
2,972,282	+		LU632_RS15695	0.29	+1.0
2,972,282	+		LU632_RS15695	0.29	+2.6
2,972,282	+		LU632_RS15695	0.29	+0.3
2,972,283	-		LU632_RS15695	0.29	-1.5
2,972,283	-		LU632_RS15695	0.29	+0.7
2,972,283	-		LU632_RS15695	0.29	-0.3
2,972,283	-		LU632_RS15695	0.29	-0.1
2,972,283	-		LU632_RS15695	0.29	-0.8
2,972,283	-		LU632_RS15695	0.29	-1.6
2,972,283	-		LU632_RS15695	0.29	+0.8
2,972,395	+		LU632_RS15695	0.57	-1.4
2,972,398	+		LU632_RS15695	0.57	+0.6
2,972,398	+		LU632_RS15695	0.57	+2.0
2,972,399	-		LU632_RS15695	0.58	-1.1
2,972,399	-		LU632_RS15695	0.58	-2.1
2,972,471	+		LU632_RS15695	0.75	-1.7
2,972,471	+		LU632_RS15695	0.75	+0.7
2,972,472	-		LU632_RS15695	0.75	-2.2
2,972,472	-		LU632_RS15695	0.75	+0.2
2,972,472	-		LU632_RS15695	0.75	-0.4
2,972,473	+		LU632_RS15695	0.76	+1.2
2,972,474	-		LU632_RS15695	0.76	+0.4
2,972,474	-		LU632_RS15695	0.76	+4.6
2,972,599	-				+0.3
2,972,620	+				-0.9
2,972,622	+				+2.6
2,972,645	-	yqaB	LU632_RS15700	0.13	-1.2
2,972,645	-	yqaB	LU632_RS15700	0.13	-0.6
2,972,737	+	yqaB	LU632_RS15700	0.30	-1.6
2,972,848	-	yqaB	LU632_RS15700	0.49	-0.5
2,972,985	+	yqaB	LU632_RS15700	0.73	-1.6
2,972,986	-	yqaB	LU632_RS15700	0.74	-1.0
2,973,000	+	yqaB	LU632_RS15700	0.76	-2.0
2,973,012	+	yqaB	LU632_RS15700	0.78	-0.2
2,973,042	+	yqaB	LU632_RS15700	0.83	-1.3
2,973,123	-				-0.4
2,973,131	+				+1.0
2,973,131	+				-0.8
2,973,131	+				+0.5
2,973,131	+				+2.0
2,973,132	-				+0.5
2,973,132	-				-1.3
2,973,132	-				-0.7
2,973,132	-				+0.1
2,973,132	-				+0.0
2,973,132	-				+0.0
2,973,136	-				+0.4
2,973,173	+				+1.2
2,973,174	-				+1.7
2,973,174	-				-0.3
2,973,184	-				+0.6
2,973,247	+				-0.7
2,973,364	+				+2.0
2,973,387	+				-1.5
2,973,458	-				-1.1
2,973,471	+				+3.0
2,973,472	-				+0.4
2,973,479	+				+0.7
2,973,480	-				-2.3
2,973,484	-				-1.3
2,973,512	+				-1.6
2,973,513	-				+0.6
2,973,514	+				+0.2
2,973,514	+				-0.3
2,973,514	+				-1.2
2,973,515	-				-0.5
2,973,515	-				-0.7
2,973,515	-				-0.2
2,973,519	-				-1.1
2,973,519	-				+1.5
2,973,531	+				+0.7
2,973,535	+				-0.8
2,973,536	-				-1.4
2,973,566	+				+1.3
2,973,567	-				-0.2
2,973,569	+				+2.6
2,973,892	+				-1.1
2,973,982	-				+0.6
2,974,055	+				+2.4
2,974,055	+				-0.6