Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15090

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,860,399	-		LU632_RS15080	0.22	+0.7
2,860,399	-		LU632_RS15080	0.22	+0.2
2,860,479	-		LU632_RS15080	0.40	+0.3
2,860,554	-		LU632_RS15080	0.58	-0.3
2,860,719	-				-1.3
2,860,731	-				-0.6
2,860,814	-		LU632_RS15085	0.13	+0.1
2,860,875	+		LU632_RS15085	0.34	-1.2
2,860,875	+		LU632_RS15085	0.34	-0.6
2,860,981	+		LU632_RS15085	0.71	+2.2
2,860,982	-		LU632_RS15085	0.71	-0.4
2,860,982	-		LU632_RS15085	0.71	-0.1
2,860,982	-		LU632_RS15085	0.71	+0.3
2,860,983	+		LU632_RS15085	0.71	+0.2
2,861,065	+				+0.8
2,861,065	+				+0.6
2,861,066	-				-0.0
2,861,125	+				+1.5
2,861,137	-				-0.6
2,861,192	-				+0.5
2,861,223	+				+0.3
2,861,225	+				+1.2
2,861,225	+				-0.4
2,861,225	+				-0.6
2,861,225	+				+0.0
2,861,225	+				+0.7
2,861,226	-				+3.5
2,861,229	+				-0.1
2,861,230	-				-0.0
2,861,255	+				+0.9
2,861,270	-				-0.4
2,861,272	-				+1.1
2,861,272	-				-0.4
2,861,274	-				-2.0
2,861,274	-				+0.4
2,861,534	-				+1.0
2,861,647	+		LU632_RS15090	0.12	+2.1
2,861,648	-		LU632_RS15090	0.12	+0.2
2,861,673	+		LU632_RS15090	0.13	-0.1
2,861,707	-		LU632_RS15090	0.14	+1.0
2,861,776	-		LU632_RS15090	0.17	+1.6
2,861,801	+		LU632_RS15090	0.19	-0.4
2,861,801	+		LU632_RS15090	0.19	-0.9
2,861,813	+		LU632_RS15090	0.19	-0.4
2,861,814	-		LU632_RS15090	0.19	+0.7
2,861,882	-		LU632_RS15090	0.22	+1.6
2,861,882	-		LU632_RS15090	0.22	-1.6
2,861,882	-		LU632_RS15090	0.22	-0.7
2,861,906	+		LU632_RS15090	0.23	-0.0
2,861,951	+		LU632_RS15090	0.25	-0.0
2,861,951	+		LU632_RS15090	0.25	-1.7
2,861,951	+		LU632_RS15090	0.25	-0.4
2,861,952	-		LU632_RS15090	0.25	+1.3
2,862,052	+		LU632_RS15090	0.30	-0.2
2,862,052	+		LU632_RS15090	0.30	+0.5
2,862,071	+		LU632_RS15090	0.31	+1.1
2,862,071	+		LU632_RS15090	0.31	-1.3
2,862,129	+		LU632_RS15090	0.33	+1.1
2,862,190	+		LU632_RS15090	0.36	+0.3
2,862,190	+		LU632_RS15090	0.36	-0.3
2,862,190	+		LU632_RS15090	0.36	+0.7
2,862,190	+		LU632_RS15090	0.36	+0.4
2,862,190	+		LU632_RS15090	0.36	+1.4
2,862,190	+		LU632_RS15090	0.36	-2.6
2,862,190	+		LU632_RS15090	0.36	-0.5
2,862,190	+		LU632_RS15090	0.36	-0.6
2,862,191	-		LU632_RS15090	0.36	-0.0
2,862,191	-		LU632_RS15090	0.36	-1.4
2,862,255	+		LU632_RS15090	0.39	-0.8
2,862,297	+		LU632_RS15090	0.41	-0.4
2,862,317	-		LU632_RS15090	0.42	-0.6
2,862,355	-		LU632_RS15090	0.43	+1.2
2,862,356	+		LU632_RS15090	0.43	+0.4
2,862,357	-		LU632_RS15090	0.43	+0.6
2,862,366	+		LU632_RS15090	0.44	-0.0
2,862,427	-		LU632_RS15090	0.46	-1.1
2,862,497	-		LU632_RS15090	0.50	-0.5
2,862,558	+		LU632_RS15090	0.52	+1.0
2,862,559	-		LU632_RS15090	0.52	+1.3
2,862,559	-		LU632_RS15090	0.52	+0.2
2,862,605	+		LU632_RS15090	0.54	+0.6
2,862,605	+		LU632_RS15090	0.54	-1.4
2,862,642	+		LU632_RS15090	0.56	+0.7
2,862,765	+		LU632_RS15090	0.62	+1.6
2,862,866	+		LU632_RS15090	0.66	-1.0
2,862,866	+		LU632_RS15090	0.66	-0.7
2,862,917	+		LU632_RS15090	0.68	+0.3
2,862,958	-		LU632_RS15090	0.70	+0.2
2,862,997	-		LU632_RS15090	0.72	-0.5
2,863,188	+		LU632_RS15090	0.80	+1.4
2,863,189	-		LU632_RS15090	0.80	+1.0
2,863,189	-		LU632_RS15090	0.80	+0.0
2,863,233	+		LU632_RS15090	0.82	-0.4
2,863,233	+		LU632_RS15090	0.82	-0.6
2,863,233	+		LU632_RS15090	0.82	+0.6
2,863,234	-		LU632_RS15090	0.82	-0.1
2,863,234	-		LU632_RS15090	0.82	-0.5
2,863,234	-		LU632_RS15090	0.82	-0.0
2,863,309	+		LU632_RS15090	0.86	+0.1
2,863,310	-		LU632_RS15090	0.86	-0.3
2,863,503	+				+1.8
2,863,503	+				+0.5
2,863,697	-		LU632_RS15095	0.37	-0.4
2,863,810	+				+1.0
2,863,810	+				+1.2
2,863,810	+				-1.8