Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15075

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,858,648	+				-0.6
2,858,663	-				-1.0
2,858,739	-		LU632_RS15065	0.26	+0.2
2,858,862	+		LU632_RS15065	0.64	+0.3
2,858,886	-		LU632_RS15065	0.71	+1.0
2,858,984	-				+1.8
2,859,045	+				-0.3
2,859,045	+				-2.0
2,859,047	+				+0.6
2,859,048	-				-0.8
2,859,101	+		LU632_RS15070	0.18	-0.5
2,859,101	+		LU632_RS15070	0.18	-0.4
2,859,114	+		LU632_RS15070	0.24	+0.1
2,859,159	+		LU632_RS15070	0.46	-1.8
2,859,159	+		LU632_RS15070	0.46	+0.2
2,859,160	-		LU632_RS15070	0.46	-0.2
2,859,160	-		LU632_RS15070	0.46	-0.4
2,859,173	+		LU632_RS15070	0.52	-1.8
2,859,181	+		LU632_RS15070	0.56	-1.2
2,859,292	+				+1.8
2,859,324	-				-0.8
2,859,394	+				-2.6
2,859,416	+		LU632_RS15075	0.15	+1.5
2,859,533	+		LU632_RS15075	0.47	-0.5
2,859,533	+		LU632_RS15075	0.47	+0.4
2,859,534	-		LU632_RS15075	0.47	+1.2
2,859,534	-		LU632_RS15075	0.47	-1.3
2,859,535	+		LU632_RS15075	0.47	-0.2
2,859,535	+		LU632_RS15075	0.47	-0.7
2,859,535	+		LU632_RS15075	0.47	+1.0
2,859,536	-		LU632_RS15075	0.48	+0.6
2,859,541	+		LU632_RS15075	0.49	+0.7
2,859,541	+		LU632_RS15075	0.49	+0.3
2,859,541	+		LU632_RS15075	0.49	+0.4
2,859,562	+		LU632_RS15075	0.55	+0.1
2,859,604	+		LU632_RS15075	0.66	-0.8
2,859,609	+		LU632_RS15075	0.67	+0.2
2,859,640	+		LU632_RS15075	0.76	+0.6
2,859,671	+		LU632_RS15075	0.84	+0.2
2,859,672	-		LU632_RS15075	0.84	-1.8
2,859,701	-				-0.5
2,859,750	+				+2.0
2,859,750	+				-0.5
2,859,751	-				+1.0
2,859,751	-				-0.8
2,859,854	-				-1.0
2,859,862	-				+0.4
2,859,874	+				-1.5
2,859,875	-				-0.3
2,860,004	+				-1.2
2,860,101	+				+0.1
2,860,102	-				-0.8
2,860,102	-				-0.7
2,860,119	+				+2.8
2,860,164	+				-0.8
2,860,164	+				+0.3
2,860,359	-		LU632_RS15080	0.12	+0.4
2,860,399	-		LU632_RS15080	0.22	+0.7
2,860,399	-		LU632_RS15080	0.22	+0.2
2,860,479	-		LU632_RS15080	0.40	+0.3
2,860,554	-		LU632_RS15080	0.58	-0.3
2,860,719	-				-1.3