Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15060

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,856,568	+		LU632_RS15050	0.79	-0.4
2,856,569	-		LU632_RS15050	0.79	-0.9
2,856,582	-		LU632_RS15050	0.83	-0.0
2,856,595	+		LU632_RS15050	0.86	-0.1
2,856,652	+				-1.6
2,856,652	+				+0.8
2,856,652	+				+2.4
2,856,653	-				+0.8
2,856,653	-				-0.8
2,856,653	-				+0.5
2,856,654	+				+0.4
2,856,654	+				-1.7
2,856,655	-				-1.5
2,856,752	+		LU632_RS15055	0.38	+1.2
2,856,769	+		LU632_RS15055	0.44	+1.8
2,856,770	-		LU632_RS15055	0.44	-0.4
2,856,770	-		LU632_RS15055	0.44	+1.0
2,856,770	-		LU632_RS15055	0.44	+2.7
2,856,782	-		LU632_RS15055	0.48	+0.7
2,856,805	+		LU632_RS15055	0.56	-0.1
2,856,890	+		LU632_RS15055	0.85	-0.0
2,856,890	+		LU632_RS15055	0.85	+1.0
2,856,890	+		LU632_RS15055	0.85	+0.8
2,856,891	-		LU632_RS15055	0.85	+0.2
2,856,891	-		LU632_RS15055	0.85	-0.8
2,856,891	-		LU632_RS15055	0.85	+0.8
2,856,892	+		LU632_RS15055	0.85	+0.1
2,856,923	+				+3.2
2,856,923	+				-0.6
2,856,947	-				+1.0
2,856,960	-				-0.0
2,856,960	-				-0.7
2,856,960	-				-0.0
2,856,960	-				+0.3
2,857,106	-				-1.6
2,857,106	-				-1.8
2,857,141	+				+1.0
2,857,143	+				-1.6
2,857,158	-				-0.3
2,857,224	+				-0.6
2,857,225	-				-1.9
2,857,304	+				+1.7
2,857,304	+				+0.2
2,857,354	+				+1.0
2,857,355	-				+1.6
2,857,361	-				-1.8
2,857,371	-				+0.5
2,858,648	+				-0.6
2,858,663	-				-1.0
2,858,739	-		LU632_RS15065	0.26	+0.2
2,858,862	+		LU632_RS15065	0.64	+0.3
2,858,886	-		LU632_RS15065	0.71	+1.0
2,858,984	-				+1.8
2,859,045	+				-0.3
2,859,045	+				-2.0
2,859,047	+				+0.6
2,859,048	-				-0.8
2,859,101	+		LU632_RS15070	0.18	-0.5
2,859,101	+		LU632_RS15070	0.18	-0.4
2,859,114	+		LU632_RS15070	0.24	+0.1
2,859,159	+		LU632_RS15070	0.46	-1.8
2,859,159	+		LU632_RS15070	0.46	+0.2
2,859,160	-		LU632_RS15070	0.46	-0.2
2,859,160	-		LU632_RS15070	0.46	-0.4
2,859,173	+		LU632_RS15070	0.52	-1.8
2,859,181	+		LU632_RS15070	0.56	-1.2
2,859,292	+				+1.8
2,859,324	-				-0.8
2,859,394	+				-2.6
2,859,416	+		LU632_RS15075	0.15	+1.5