Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14605

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,776,741	-		LU632_RS14600	0.20	-1.1
2,776,894	+		LU632_RS14600	0.34	+0.1
2,776,894	+		LU632_RS14600	0.34	-1.0
2,776,894	+		LU632_RS14600	0.34	-0.4
2,776,901	+		LU632_RS14600	0.35	-0.1
2,776,901	+		LU632_RS14600	0.35	+0.5
2,776,901	+		LU632_RS14600	0.35	-0.0
2,776,901	+		LU632_RS14600	0.35	-0.7
2,776,901	+		LU632_RS14600	0.35	+0.0
2,776,901	+		LU632_RS14600	0.35	-0.1
2,776,902	-		LU632_RS14600	0.35	-1.6
2,776,902	-		LU632_RS14600	0.35	+1.9
2,776,902	-		LU632_RS14600	0.35	+3.4
2,776,905	+		LU632_RS14600	0.35	-0.4
2,776,906	-		LU632_RS14600	0.35	+1.9
2,776,995	-		LU632_RS14600	0.43	-0.4
2,777,138	+		LU632_RS14600	0.56	-0.5
2,777,139	-		LU632_RS14600	0.56	+0.8
2,777,158	+		LU632_RS14600	0.57	-0.1
2,777,159	-		LU632_RS14600	0.58	-3.1
2,777,322	+		LU632_RS14600	0.72	-1.6
2,777,389	+		LU632_RS14600	0.78	-0.8
2,777,520	+		LU632_RS14600	0.90	-1.8
2,777,521	-		LU632_RS14600	0.90	+0.6
2,777,523	+		LU632_RS14600	0.90	-0.5
2,777,617	+				+0.1
2,777,618	-				-0.6
2,777,635	+				+0.5
2,777,717	-				-2.4
2,777,775	+				+1.6
2,777,840	+				+2.6
2,777,840	+				+2.9
2,777,840	+				+0.5
2,777,841	-				+1.8
2,777,847	-				+0.2
2,777,847	-				+0.3
2,777,847	-				-0.1
2,777,927	-	pepT	LU632_RS14605	0.15	-0.4
2,777,927	-	pepT	LU632_RS14605	0.15	-0.6
2,778,018	-	pepT	LU632_RS14605	0.23	+0.4
2,778,141	+	pepT	LU632_RS14605	0.33	-0.6
2,778,141	+	pepT	LU632_RS14605	0.33	-1.6
2,778,142	-	pepT	LU632_RS14605	0.33	+2.3
2,778,142	-	pepT	LU632_RS14605	0.33	-1.5
2,778,142	-	pepT	LU632_RS14605	0.33	-1.2
2,778,142	-	pepT	LU632_RS14605	0.33	+0.9
2,778,142	-	pepT	LU632_RS14605	0.33	-0.2
2,778,142	-	pepT	LU632_RS14605	0.33	+1.2
2,778,142	-	pepT	LU632_RS14605	0.33	-1.0
2,778,142	-	pepT	LU632_RS14605	0.33	-1.0
2,778,143	+	pepT	LU632_RS14605	0.33	-0.4
2,778,144	-	pepT	LU632_RS14605	0.33	+1.9
2,778,144	-	pepT	LU632_RS14605	0.33	+0.7
2,778,144	-	pepT	LU632_RS14605	0.33	-0.1
2,778,144	-	pepT	LU632_RS14605	0.33	-0.0
2,778,144	-	pepT	LU632_RS14605	0.33	+0.2
2,778,144	-	pepT	LU632_RS14605	0.33	+0.4
2,778,144	-	pepT	LU632_RS14605	0.33	-1.2
2,778,144	-	pepT	LU632_RS14605	0.33	-0.5
2,778,148	-	pepT	LU632_RS14605	0.33	+0.9
2,778,192	-	pepT	LU632_RS14605	0.37	-0.3
2,778,192	-	pepT	LU632_RS14605	0.37	+0.0
2,778,283	-	pepT	LU632_RS14605	0.44	-0.1
2,778,328	+	pepT	LU632_RS14605	0.48	-0.1
2,778,349	-	pepT	LU632_RS14605	0.50	-0.2
2,778,395	+	pepT	LU632_RS14605	0.53	+0.6
2,778,449	-	pepT	LU632_RS14605	0.58	-1.2
2,778,474	+	pepT	LU632_RS14605	0.60	+0.4
2,778,481	-	pepT	LU632_RS14605	0.60	-0.1
2,778,496	-	pepT	LU632_RS14605	0.61	+1.5
2,778,594	+	pepT	LU632_RS14605	0.69	-1.2
2,778,594	+	pepT	LU632_RS14605	0.69	+0.6
2,778,595	-	pepT	LU632_RS14605	0.69	+3.1
2,778,748	-	pepT	LU632_RS14605	0.82	-2.1
2,778,776	-	pepT	LU632_RS14605	0.84	-0.1
2,778,877	+				+0.8
2,778,878	-				+0.1
2,778,932	+				-0.8
2,778,961	+				+0.2
2,778,962	-				-0.1
2,778,967	-				+0.3
2,779,011	-				-0.9
2,779,024	+				+0.1
2,779,028	+				-1.2
2,779,028	+				-0.3
2,779,029	-				+2.0
2,779,058	+				-0.1
2,779,058	+				-0.1
2,779,071	-				+0.1
2,779,116	+				-1.1
2,779,116	+				-0.3
2,779,128	+		LU632_RS14610	0.11	+1.2
2,779,129	-		LU632_RS14610	0.11	+0.9
2,779,133	+		LU632_RS14610	0.12	-0.7
2,779,134	-		LU632_RS14610	0.12	+0.9
2,779,382	+		LU632_RS14610	0.58	+1.3
2,779,457	+		LU632_RS14610	0.72	-0.5
2,779,635	-				-0.6
2,779,635	-				+0.1
2,779,669	+				+0.6
2,779,669	+				+2.8
2,779,690	-				-0.6
2,779,696	+				-0.6
2,779,696	+				-0.9
2,779,701	+				+0.1
2,779,702	-				-2.1
2,779,708	+				-0.1
2,779,709	-				-1.6
2,779,794	+				-0.8
2,779,862	+		LU632_RS14615	0.14	-2.3
2,779,863	-		LU632_RS14615	0.14	+1.3